Wall clock time and date at job start Mon Mar 30 2020 02:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.39772 * 110.99727 * 2 1 4 4 C 1.54429 * 111.76699 * 189.12740 * 3 2 1 5 5 C 1.50754 * 109.02785 * 282.58786 * 4 3 2 6 6 C 1.54163 * 112.61011 * 93.01733 * 5 4 3 7 7 C 1.53815 * 111.97007 * 318.48955 * 6 5 4 8 8 H 1.09000 * 109.05342 * 79.59750 * 7 6 5 9 9 O 1.42898 * 109.05312 * 198.56194 * 7 6 5 10 10 C 1.34926 * 117.00523 * 210.00076 * 9 7 6 11 11 H 1.08001 * 119.99731 * 0.02562 * 10 9 7 12 12 C 1.38637 * 120.00343 * 179.97438 * 10 9 7 13 13 N 1.31589 * 119.99850 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00265 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46882 * 60.00473 * 14 12 10 16 16 H 1.48492 * 109.47253 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46894 * 300.00818 * 14 12 10 18 18 C 1.47637 * 110.99743 * 128.88783 * 2 1 3 19 19 H 1.08992 * 109.47459 * 56.04658 * 1 2 3 20 20 H 1.09004 * 109.47040 * 176.04809 * 1 2 3 21 21 H 1.09000 * 109.47033 * 296.04762 * 1 2 3 22 22 H 1.09004 * 109.02213 * 309.71604 * 3 2 1 23 23 H 1.08999 * 109.02748 * 68.53710 * 3 2 1 24 24 H 1.08997 * 109.55032 * 42.45194 * 4 3 2 25 25 H 1.09011 * 109.54321 * 162.63255 * 4 3 2 26 26 H 1.09001 * 108.85508 * 213.82751 * 5 4 3 27 27 H 1.08997 * 108.85242 * 332.31261 * 5 4 3 28 28 H 1.09003 * 108.98083 * 79.13284 * 6 5 4 29 29 H 1.08997 * 108.98246 * 197.92909 * 6 5 4 30 30 H 0.96997 * 120.00123 * 179.97438 * 13 12 10 31 31 H 1.08999 * 109.74735 * 269.98510 * 18 2 1 32 32 H 1.08995 * 109.74524 * 30.71081 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9699 1.3049 0.0000 4 6 3.4971 1.3322 -0.2275 5 6 4.1920 0.9517 1.0551 6 6 4.4983 -0.5569 1.1383 7 6 3.3290 -1.4110 0.6195 8 1 3.3550 -1.4255 -0.4701 9 8 3.4745 -2.7463 1.1070 10 6 2.9839 -3.7375 0.3341 11 1 2.5077 -3.5034 -0.6066 12 6 3.0919 -5.0566 0.7469 13 7 3.6725 -5.3419 1.8928 14 14 2.4120 -6.4288 -0.3228 15 1 3.0910 -6.4095 -1.6434 16 1 2.6515 -7.7367 0.3383 17 1 0.9527 -6.2308 -0.5135 18 6 1.9981 -0.8653 1.0729 19 1 -0.3634 0.5739 -0.8524 20 1 -0.3633 -1.0253 -0.0708 21 1 -0.3633 0.4513 0.9233 22 1 1.4824 1.8725 -0.7927 23 1 1.7452 1.7718 0.9590 24 1 3.7620 0.6215 -1.0103 25 1 3.8034 2.3348 -0.5263 26 1 5.1280 1.5057 1.1264 27 1 3.5552 1.2273 1.8958 28 1 5.3858 -0.7718 0.5431 29 1 4.6957 -0.8218 2.1770 30 1 3.7478 -6.2647 2.1818 31 1 2.1303 -0.2826 1.9845 32 1 1.3066 -1.6874 1.2575 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045171.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:50 Heat of formation + Delta-G solvation = -33.417403 kcal Electronic energy + Delta-G solvation = -13450.640483 eV Core-core repulsion = 11218.697427 eV Total energy + Delta-G solvation = -2231.943056 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.07855 -35.99659 -33.86704 -31.80475 -30.05489 -27.30496 -25.01857 -24.28742 -23.04734 -20.42805 -18.83772 -17.49163 -15.95318 -15.30578 -14.81592 -14.39303 -14.25222 -13.66624 -13.11120 -12.64344 -12.55297 -12.46897 -11.71246 -11.58521 -11.20921 -10.96339 -10.95527 -10.61980 -10.40020 -10.22332 -10.19830 -9.68403 -9.39082 -8.96787 -7.98980 -7.73474 -5.86701 -3.48983 3.36848 3.38714 3.41752 4.25807 4.43953 5.02815 5.19543 5.29628 5.43004 5.52392 5.61802 5.66067 5.77319 5.85156 5.90140 6.08928 6.12485 6.16617 6.23629 6.30587 6.44118 6.50992 6.58539 6.87978 7.06498 7.08930 7.50871 7.59921 7.82712 8.53124 9.57557 10.27921 11.34562 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043269 B = 0.010263 C = 0.008939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.954837 B = 2727.678128 C = 3131.571228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.560 5.560 3 C 0.079 3.921 4 C -0.120 4.120 5 C -0.115 4.115 6 C -0.113 4.113 7 C 0.101 3.899 8 H 0.051 0.949 9 O -0.292 6.292 10 C -0.352 4.352 11 H 0.063 0.937 12 C 0.020 3.980 13 N -0.893 5.893 14 Si 0.922 3.078 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.279 1.279 18 C 0.050 3.950 19 H 0.060 0.940 20 H 0.069 0.931 21 H 0.019 0.981 22 H 0.062 0.938 23 H 0.013 0.987 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.257 0.743 31 H 0.034 0.966 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 11.907 -3.336 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.285 5.285 3 C -0.051 4.051 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.151 4.151 7 C 0.041 3.959 8 H 0.069 0.931 9 O -0.206 6.206 10 C -0.431 4.431 11 H 0.081 0.919 12 C -0.178 4.178 13 N -0.536 5.536 14 Si 0.750 3.250 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.205 1.205 18 C -0.077 4.077 19 H 0.078 0.922 20 H 0.088 0.912 21 H 0.037 0.963 22 H 0.081 0.919 23 H 0.031 0.969 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.886 11.530 -3.450 12.377 hybrid contribution -0.754 -0.271 0.024 0.801 sum -3.640 11.260 -3.425 12.319 Atomic orbital electron populations 1.22303 0.87366 1.02269 0.99424 1.58741 1.07013 1.13109 1.49650 1.20919 0.95756 0.89510 0.98938 1.21511 0.94325 1.01088 0.98859 1.21363 0.99901 0.96441 0.97576 1.21884 0.98427 0.92545 1.02216 1.21527 0.90981 0.85837 0.97547 0.93106 1.85678 1.79054 1.10003 1.45873 1.20854 1.35401 0.85579 1.01277 0.91900 1.24933 0.99009 0.96837 0.96992 1.70014 1.44872 1.18248 1.20498 0.86082 0.78882 0.80686 0.79368 1.20444 1.21029 1.20489 1.22566 0.99045 0.95596 0.90476 0.92158 0.91227 0.96291 0.91950 0.96948 0.90537 0.91976 0.92483 0.92783 0.92286 0.91600 0.93350 0.94765 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.44 60.07 0.57 1.06 16 2 N -0.56 -9.58 4.19 -248.32 -1.04 -10.62 16 3 C 0.08 1.14 4.93 -6.75 -0.03 1.11 16 4 C -0.12 -1.69 5.65 -27.11 -0.15 -1.84 16 5 C -0.12 -1.73 5.32 -27.25 -0.14 -1.87 16 6 C -0.11 -2.16 5.56 -25.70 -0.14 -2.30 16 7 C 0.10 2.27 2.22 -27.40 -0.06 2.21 16 8 H 0.05 1.19 6.92 -51.93 -0.36 0.83 16 9 O -0.29 -8.45 9.31 -16.50 -0.15 -8.60 16 10 C -0.35 -10.46 9.58 30.88 0.30 -10.16 16 11 H 0.06 1.79 7.65 -52.49 -0.40 1.39 16 12 C 0.02 0.59 5.49 -17.51 -0.10 0.49 16 13 N -0.89 -28.39 13.68 55.48 0.76 -27.63 16 14 Si 0.92 22.52 29.55 -169.99 -5.02 17.50 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C 0.05 1.00 5.04 -4.51 -0.02 0.98 16 19 H 0.06 0.75 7.96 -51.93 -0.41 0.34 16 20 H 0.07 1.06 7.95 -51.93 -0.41 0.64 16 21 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 22 H 0.06 0.80 7.88 -51.93 -0.41 0.39 16 23 H 0.01 0.18 7.54 -51.93 -0.39 -0.21 16 24 H 0.08 1.20 7.11 -51.93 -0.37 0.83 16 25 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.81 6.57 -51.93 -0.34 0.46 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.33 8.13 -51.93 -0.42 0.90 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 32 H 0.08 1.87 7.38 -51.93 -0.38 1.49 16 LS Contribution 253.90 15.07 3.83 3.83 Total: -1.00 -32.41 253.90 -6.50 -38.91 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -5.07 Total: -3.05 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.21 Total: -10.33 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.28 Total: -38.25 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.15 Total: -8.60 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.41 -6.50 -38.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045171.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.492 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds