Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86802 * 119.99721 * 2 1 4 4 H 1.48494 * 109.47230 * 274.98805 * 3 2 1 5 5 H 1.48500 * 109.46961 * 34.99003 * 3 2 1 6 6 H 1.48499 * 109.46864 * 154.98552 * 3 2 1 7 7 C 1.40123 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99831 * 186.19234 * 7 2 1 9 9 C 1.41423 * 119.99829 * 6.19322 * 7 2 1 10 10 N 1.34078 * 120.63981 * 353.61468 * 9 7 2 11 11 C 1.31866 * 120.53955 * 180.02562 * 10 9 7 12 12 O 1.35465 * 119.02634 * 179.71916 * 11 10 9 13 13 N 1.32597 * 121.94749 * 0.02562 * 11 10 9 14 14 C 1.32333 * 121.26162 * 359.97438 * 13 11 10 15 15 C 1.38551 * 119.29914 * 0.02562 * 14 13 11 16 16 Cl 1.73603 * 120.88578 * 179.97438 * 15 14 13 17 17 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 18 18 H 0.96701 * 114.00043 * 90.00374 * 12 11 10 19 19 H 1.08001 * 120.35417 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3827 2.1074 -1.3947 5 1 1.4948 2.6199 0.8029 6 1 3.5869 1.4121 0.5920 7 6 2.0074 -1.2135 -0.0005 8 1 3.0826 -1.2162 0.1003 9 6 1.3065 -2.4346 -0.1332 10 7 -0.0341 -2.4567 -0.1314 11 6 -0.6857 -3.5965 -0.2547 12 8 -2.0402 -3.5839 -0.2431 13 7 -0.0541 -4.7552 -0.3837 14 6 1.2676 -4.8195 -0.3950 15 6 2.0042 -3.6528 -0.2689 16 17 3.7398 -3.6894 -0.2778 17 1 -0.4850 0.8400 0.0004 18 1 -2.4401 -3.4815 -1.1176 19 1 1.7668 -5.7713 -0.5005 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261049228.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = -31.656588 kcal Electronic energy + Delta-G solvation = -10485.937859 eV Core-core repulsion = 8221.855128 eV Total energy + Delta-G solvation = -2264.082731 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.009 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.11124 -38.08572 -36.92552 -36.00764 -33.52831 -31.42572 -28.48597 -24.50883 -23.86334 -20.28823 -19.23172 -17.99036 -17.03393 -16.51860 -16.42940 -15.12731 -14.58033 -14.36164 -13.30847 -13.06946 -12.98632 -12.54988 -12.50764 -11.99184 -11.74712 -11.73851 -11.53306 -10.74622 -9.67329 -9.47373 -8.50584 -6.92373 0.38779 0.80921 1.40871 1.52704 1.57323 1.64100 2.16362 2.57716 2.83699 3.54474 3.93242 4.28915 4.69020 4.89079 5.05016 5.55077 5.95138 6.18209 6.54223 6.68373 7.00977 7.88870 8.19751 Molecular weight = 200.01amu Principal moments of inertia in cm(-1) A = 0.030656 B = 0.016994 C = 0.010994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.127635 B = 1647.247322 C = 2546.255215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.021 3.979 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.249 1.249 7 C -0.413 4.413 8 H 0.111 0.889 9 C 0.248 3.752 10 N -0.545 5.545 11 C 0.470 3.530 12 O -0.479 6.479 13 N -0.634 5.634 14 C 0.172 3.828 15 C -0.256 4.256 16 Cl -0.069 7.069 17 H 0.290 0.710 18 H 0.414 0.586 19 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.765 0.605 -1.995 4.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.351 5.351 2 C -0.205 4.205 3 Si 0.813 3.187 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.172 1.172 7 C -0.445 4.445 8 H 0.129 0.871 9 C 0.122 3.878 10 N -0.277 5.277 11 C 0.163 3.837 12 O -0.283 6.283 13 N -0.369 5.369 14 C 0.014 3.986 15 C -0.293 4.293 16 Cl -0.042 7.042 17 H 0.101 0.899 18 H 0.273 0.727 19 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.688 0.677 -1.383 3.098 hybrid contribution 0.843 0.468 -0.470 1.072 sum 3.532 1.144 -1.853 4.149 Atomic orbital electron populations 1.70154 1.09302 1.30572 1.25071 1.27244 0.95773 1.05212 0.92272 0.84994 0.79269 0.74675 0.79778 1.18301 1.18891 1.17204 1.20331 0.96287 0.89479 1.38402 0.87105 1.18833 0.86807 0.92715 0.89473 1.69024 1.08727 1.26862 1.23070 1.20746 0.85806 0.85289 0.91901 1.84543 1.12985 1.94962 1.35835 1.67809 1.10219 1.29594 1.29255 1.22638 0.87852 0.97102 0.91041 1.22500 0.85269 0.97332 1.24159 1.98199 1.09609 1.98661 1.97684 0.89891 0.72743 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.97 11.55 21.85 0.25 -36.72 13 2 C 0.02 0.98 5.49 85.32 0.47 1.45 13 3 Si 0.99 34.73 29.56 68.60 2.03 36.76 13 4 H -0.26 -8.70 7.11 99.48 0.71 -7.99 13 5 H -0.26 -8.84 7.11 99.48 0.71 -8.13 13 6 H -0.25 -8.33 7.11 99.48 0.71 -7.62 13 7 C -0.41 -20.79 8.86 23.51 0.21 -20.58 13 8 H 0.11 5.20 6.81 -2.91 -0.02 5.18 13 9 C 0.25 13.21 6.57 40.27 0.26 13.47 13 10 N -0.54 -30.14 8.10 -307.13 -2.49 -32.62 13 11 C 0.47 24.01 8.70 180.62 1.57 25.58 13 12 O -0.48 -21.34 13.64 -87.64 -1.20 -22.54 13 13 N -0.63 -30.61 10.44 -313.46 -3.27 -33.88 13 14 C 0.17 7.63 11.12 84.69 0.94 8.57 13 15 C -0.26 -12.04 6.42 23.03 0.15 -11.89 13 16 Cl -0.07 -2.72 27.60 -2.72 -0.08 -2.79 13 17 H 0.29 13.06 8.29 -92.71 -0.77 12.29 13 18 H 0.41 13.73 9.06 -74.06 -0.67 13.06 13 19 H 0.18 6.33 8.06 -2.91 -0.02 6.30 13 Total: -1.00 -61.60 201.61 -0.51 -62.11 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.64 Total: 13.07 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 3.60 Total: 16.60 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -5.51 Total: -103.22 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -1.20 Total: -22.54 kcal Atomic # 14 Polarization: 34.73 SS G_CDS: 2.03 Total: 36.76 kcal Atomic # 17 Polarization: -2.72 SS G_CDS: -0.08 Total: -2.79 kcal Total: -61.60 -0.51 -62.11 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261049228.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.456 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds