Wall clock time and date at job start Mon Mar 30 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47122 * 2 1 4 4 C 1.46900 * 111.00079 * 287.54798 * 3 2 1 5 5 H 1.09003 * 109.46738 * 53.57958 * 4 3 2 6 6 C 1.52997 * 109.46891 * 173.57852 * 4 3 2 7 7 C 1.50692 * 109.47376 * 293.58148 * 4 3 2 8 8 H 1.08005 * 120.00427 * 355.21036 * 7 4 3 9 9 C 1.37881 * 120.00280 * 175.20875 * 7 4 3 10 10 N 1.31517 * 119.99457 * 359.97438 * 9 7 4 11 11 Si 1.86799 * 120.00267 * 179.97438 * 9 7 4 12 12 H 1.48503 * 109.47220 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46973 * 119.99547 * 11 9 7 14 14 H 1.48498 * 109.47248 * 239.99754 * 11 9 7 15 15 C 1.46904 * 110.99754 * 163.59519 * 3 2 1 16 16 C 1.54031 * 113.81634 * 35.14813 * 15 3 2 17 17 O 1.44180 * 85.51502 * 223.19457 * 16 15 3 18 18 C 1.44170 * 93.34096 * 24.18855 * 17 16 15 19 19 H 1.09001 * 109.47126 * 177.25395 * 1 2 3 20 20 H 1.08998 * 109.47069 * 297.25320 * 1 2 3 21 21 H 1.09001 * 109.47315 * 57.25617 * 1 2 3 22 22 H 1.09000 * 109.47405 * 120.00102 * 2 1 3 23 23 H 1.09006 * 109.47227 * 240.00290 * 2 1 3 24 24 H 1.09011 * 109.46979 * 180.02562 * 6 4 3 25 25 H 1.08998 * 109.47363 * 299.99616 * 6 4 3 26 26 H 1.08993 * 109.47331 * 60.00461 * 6 4 3 27 27 H 0.97005 * 119.98994 * 179.97438 * 10 9 7 28 28 H 1.09009 * 112.99524 * 167.12703 * 15 3 2 29 29 H 1.08998 * 113.86513 * 337.33633 * 16 15 3 30 30 H 1.09002 * 113.86904 * 109.04827 * 16 15 3 31 31 H 1.08998 * 113.86817 * 221.66270 * 18 17 16 32 32 H 1.08998 * 113.86478 * 89.95837 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8053 2.0192 -1.3076 5 1 0.7569 1.9238 -1.5901 6 6 2.1780 3.5007 -1.2231 7 6 2.6677 1.3425 -2.3416 8 1 3.3673 0.5756 -2.0433 9 6 2.5637 1.7021 -3.6686 10 7 1.7114 2.6356 -4.0319 11 14 3.6333 0.8638 -4.9502 12 1 4.5011 -0.1435 -4.2886 13 1 2.7689 0.1898 -5.9521 14 1 4.4796 1.8778 -5.6288 15 6 3.4355 1.4427 0.3873 16 6 4.2659 0.2446 -0.1103 17 8 4.8528 0.2494 1.2066 18 6 3.7156 0.9047 1.8031 19 1 -0.3633 -1.0265 -0.0492 20 1 -0.3633 0.4706 0.9136 21 1 -0.3634 0.5558 -0.8644 22 1 1.8934 -0.5138 0.8900 23 1 1.8934 -0.5138 -0.8901 24 1 2.0185 3.9714 -2.1933 25 1 1.5541 3.9902 -0.4753 26 1 3.2263 3.5961 -0.9406 27 1 1.6386 2.8888 -4.9655 28 1 3.8929 2.4116 0.1862 29 1 3.6726 -0.6441 -0.3254 30 1 4.9671 0.4943 -0.9066 31 1 3.9803 1.6778 2.5244 32 1 2.9543 0.2175 2.1723 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261109376.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:56 Heat of formation + Delta-G solvation = -3.932645 kcal Electronic energy + Delta-G solvation = -13818.010969 eV Core-core repulsion = 11587.346468 eV Total energy + Delta-G solvation = -2230.664501 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.13591 -36.32012 -32.81051 -30.54686 -28.99482 -26.30171 -25.97363 -24.95421 -22.14268 -20.61512 -18.24727 -16.74329 -16.07595 -15.48344 -15.20144 -14.49906 -13.70308 -13.45732 -12.86225 -12.72635 -12.17254 -11.77415 -11.47087 -11.08843 -11.01786 -10.88969 -10.75381 -10.45768 -10.41716 -10.04154 -9.93783 -9.81131 -9.02997 -8.92781 -8.42509 -7.24136 -6.05206 -4.16279 3.22690 3.31959 3.34168 4.30189 4.35808 4.81124 5.22972 5.31087 5.58836 5.66936 5.75552 5.92090 6.06132 6.16632 6.21618 6.47536 6.50812 6.62871 6.66807 6.77625 6.83284 6.89731 6.99403 7.15030 7.50254 7.65344 7.90919 8.08227 8.23585 8.36811 8.93487 9.51619 10.97139 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.014048 C = 0.012333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.900027 B = 1992.629186 C = 2269.703175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 N -0.531 5.531 4 C 0.204 3.796 5 H 0.048 0.952 6 C -0.129 4.129 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.069 3.931 10 N -0.885 5.885 11 Si 0.884 3.116 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.046 3.954 16 C 0.009 3.991 17 O -0.397 6.397 18 C 0.029 3.971 19 H 0.044 0.956 20 H 0.049 0.951 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.026 0.974 27 H 0.261 0.739 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 -2.841 6.501 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 N -0.255 5.255 4 C 0.098 3.902 5 H 0.065 0.935 6 C -0.187 4.187 7 C -0.587 4.587 8 H 0.082 0.918 9 C -0.134 4.134 10 N -0.524 5.524 11 Si 0.712 3.288 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.065 4.065 16 C -0.069 4.069 17 O -0.316 6.316 18 C -0.048 4.048 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.422 -2.564 6.787 7.268 hybrid contribution 0.915 -0.800 -1.600 2.009 sum 1.337 -3.364 5.187 6.326 Atomic orbital electron populations 1.21709 0.95898 1.00145 1.02087 1.22003 0.95339 0.90809 0.99681 1.62395 1.14545 1.15815 1.32764 1.19339 0.97430 0.90904 0.82515 0.93468 1.21784 0.97693 0.98335 1.00898 1.21935 1.22659 1.21465 0.92598 0.91798 1.24912 0.95153 0.94869 0.98426 1.69922 1.35514 1.29964 1.16969 0.86674 0.80617 0.79600 0.81956 1.19840 1.21009 1.20975 1.24691 0.90086 0.99257 0.92438 1.24825 0.96540 0.99694 0.85830 1.89560 1.36751 1.82397 1.22878 1.24225 0.87714 0.95507 0.97359 0.93653 0.93171 0.91994 0.93026 0.93360 0.90534 0.96427 0.95454 0.92944 0.87203 0.90143 0.89404 0.89951 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 10.02 37.16 0.37 -2.04 16 2 C 0.05 0.93 4.11 -3.82 -0.02 0.92 16 3 N -0.53 -10.86 4.58 -227.98 -1.04 -11.91 16 4 C 0.20 4.86 2.15 -68.87 -0.15 4.71 16 5 H 0.05 1.25 6.47 -51.93 -0.34 0.91 16 6 C -0.13 -3.01 8.93 37.16 0.33 -2.68 16 7 C -0.55 -13.97 6.87 -34.44 -0.24 -14.21 16 8 H 0.06 1.60 4.16 -52.48 -0.22 1.38 16 9 C 0.07 1.83 5.32 -17.82 -0.09 1.74 16 10 N -0.89 -24.45 11.68 55.43 0.65 -23.80 16 11 Si 0.88 20.69 29.54 -169.99 -5.02 15.67 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.05 0.88 3.53 -66.64 -0.23 0.65 16 16 C 0.01 0.17 6.09 37.61 0.23 0.40 16 17 O -0.40 -7.57 12.45 -35.23 -0.44 -8.01 16 18 C 0.03 0.49 8.63 37.60 0.32 0.82 16 19 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.06 1.19 6.58 -51.93 -0.34 0.85 16 22 H 0.05 0.87 5.81 -51.93 -0.30 0.57 16 23 H 0.05 1.00 5.75 -51.93 -0.30 0.70 16 24 H 0.08 1.96 6.46 -51.92 -0.34 1.63 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.60 6.22 -51.93 -0.32 0.28 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 28 H 0.11 2.22 6.02 -51.92 -0.31 1.90 16 29 H 0.08 1.55 5.66 -51.93 -0.29 1.25 16 30 H 0.09 1.76 7.64 -51.93 -0.40 1.37 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.20 6.43 -51.93 -0.33 0.86 16 LS Contribution 243.32 15.07 3.67 3.67 Total: -1.00 -26.96 243.32 -5.98 -32.94 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.32 Total: 1.14 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 0.53 Total: -9.70 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.40 Total: -35.71 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.44 Total: -8.01 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.96 -5.98 -32.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261109376.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.005 kcal (2) G-P(sol) polarization free energy of solvation -26.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds