Wall clock time and date at job start Mon Mar 30 2020 02:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99868 * 2 1 4 4 C 1.53003 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46486 * 55.00275 * 4 3 2 6 6 C 1.50702 * 109.47433 * 174.99875 * 4 3 2 7 7 H 1.07991 * 119.99812 * 84.93122 * 6 4 3 8 8 C 1.37880 * 119.99855 * 264.93706 * 6 4 3 9 9 N 1.31513 * 120.00283 * 5.13406 * 8 6 4 10 10 Si 1.86794 * 119.99684 * 185.14033 * 8 6 4 11 11 H 1.48504 * 109.47211 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47363 * 119.99996 * 10 8 6 13 13 H 1.48510 * 109.47126 * 239.99912 * 10 8 6 14 14 N 1.46901 * 109.46935 * 295.00218 * 4 3 2 15 15 C 1.48533 * 110.99965 * 63.64069 * 14 4 3 16 16 C 1.54938 * 103.22263 * 159.71658 * 15 14 4 17 17 C 1.54595 * 102.92644 * 322.58653 * 16 15 14 18 18 C 1.47901 * 110.99565 * 181.03686 * 14 4 3 19 19 H 1.08996 * 109.47088 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46883 * 299.99931 * 1 2 3 21 21 H 1.09002 * 109.47332 * 59.99837 * 1 2 3 22 22 H 1.09004 * 109.47276 * 59.99835 * 3 2 1 23 23 H 1.08999 * 109.47354 * 300.00408 * 3 2 1 24 24 H 0.96995 * 120.00104 * 180.02562 * 9 8 6 25 25 H 1.08996 * 110.66803 * 278.15368 * 15 14 4 26 26 H 1.09001 * 110.66536 * 41.28606 * 15 14 4 27 27 H 1.08997 * 110.72329 * 204.22556 * 16 15 14 28 28 H 1.09007 * 110.72431 * 80.94887 * 16 15 14 29 29 H 1.08998 * 110.30826 * 263.04398 * 17 16 15 30 30 H 1.08995 * 110.31003 * 140.87229 * 17 16 15 31 31 H 1.09000 * 109.91926 * 333.50717 * 18 14 4 32 32 H 1.09007 * 109.91820 * 94.80360 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 4.1480 2.5561 -0.1232 7 1 4.2980 3.1620 0.7580 8 6 4.5168 3.0370 -1.3617 9 7 4.2426 2.3434 -2.4448 10 14 5.4060 4.6738 -1.5009 11 1 5.5935 5.2522 -0.1460 12 1 6.7310 4.4648 -2.1380 13 1 4.5999 5.6062 -2.3294 14 7 3.9768 0.5628 1.2562 15 6 3.4626 -0.8259 1.3719 16 6 4.4123 -1.4699 2.4129 17 6 5.7826 -0.8449 2.0642 18 6 5.4510 0.4521 1.3031 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.6885 1.8464 0.8900 23 1 1.6885 1.8464 -0.8899 24 1 4.5024 2.6816 -3.3160 25 1 2.4352 -0.8266 1.7360 26 1 3.5331 -1.3432 0.4150 27 1 4.4402 -2.5528 2.2916 28 1 4.1127 -1.2019 3.4262 29 1 6.3558 -1.5202 1.4290 30 1 6.3376 -0.6181 2.9744 31 1 5.8520 0.4015 0.2908 32 1 5.8712 1.3092 1.8294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261116292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:05 Heat of formation + Delta-G solvation = -48.062393 kcal Electronic energy + Delta-G solvation = -13510.441353 eV Core-core repulsion = 11277.863243 eV Total energy + Delta-G solvation = -2232.578110 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.15985 -36.47630 -33.38567 -31.03635 -28.03098 -27.51168 -25.98065 -24.14831 -21.25977 -20.01815 -19.38895 -16.50093 -15.64301 -15.20574 -15.02147 -14.51692 -14.06082 -13.69144 -12.95619 -12.49597 -12.20075 -11.79869 -11.54605 -11.11581 -10.91864 -10.88808 -10.58975 -10.53389 -10.21988 -9.95064 -9.85326 -9.59959 -9.14324 -8.68359 -8.51285 -7.08754 -6.11270 -4.17520 3.25348 3.33866 3.39292 4.34447 4.75311 5.15244 5.34304 5.49364 5.53578 5.72958 5.88410 5.91350 6.10821 6.17645 6.22789 6.43144 6.48116 6.57082 6.75081 6.80300 6.85192 6.88819 6.98504 7.14878 7.55206 7.79830 7.94439 8.14777 8.32563 8.60711 9.02366 9.50845 10.96586 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.014053 C = 0.010051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.555268 B = 1991.930331 C = 2785.186761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.397 6.397 3 C 0.079 3.921 4 C 0.202 3.798 5 H 0.037 0.963 6 C -0.506 4.506 7 H 0.065 0.935 8 C 0.063 3.937 9 N -0.888 5.888 10 Si 0.897 3.103 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.284 1.284 14 N -0.518 5.518 15 C 0.047 3.953 16 C -0.127 4.127 17 C -0.134 4.134 18 C 0.058 3.942 19 H 0.070 0.930 20 H 0.029 0.971 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 -4.563 5.308 7.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.317 6.317 3 C 0.002 3.998 4 C 0.096 3.904 5 H 0.055 0.945 6 C -0.544 4.544 7 H 0.083 0.917 8 C -0.140 4.140 9 N -0.526 5.526 10 Si 0.724 3.276 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.210 1.210 14 N -0.243 5.243 15 C -0.082 4.082 16 C -0.165 4.165 17 C -0.172 4.172 18 C -0.070 4.070 19 H 0.088 0.912 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.887 -4.374 5.510 7.283 hybrid contribution 0.485 0.682 -0.986 1.293 sum -1.402 -3.692 4.524 6.005 Atomic orbital electron populations 1.22544 0.83896 1.00936 0.99006 1.87966 1.17457 1.31072 1.95157 1.23040 0.96159 0.82010 0.98557 1.19561 0.88676 0.95584 0.86606 0.94508 1.20996 1.40121 1.00177 0.93128 0.91725 1.25071 0.95412 0.97690 0.95817 1.69985 1.46164 1.38427 0.97999 0.86461 0.79433 0.83404 0.78303 1.19446 1.20882 1.20984 1.64853 1.06127 1.15086 1.38275 1.23125 0.98352 0.90140 0.96539 1.22531 0.95726 0.98435 0.99781 1.22467 0.97169 0.97795 0.99779 1.22469 0.90416 0.95432 0.98716 0.91169 0.95194 0.95086 0.94789 0.93496 0.92757 0.90435 0.94712 0.92546 0.91821 0.92629 0.92266 0.93928 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.40 -8.61 7.61 -35.23 -0.27 -8.87 16 3 C 0.08 1.89 5.45 37.16 0.20 2.09 16 4 C 0.20 5.26 1.68 -68.86 -0.12 5.14 16 5 H 0.04 1.09 7.24 -51.92 -0.38 0.71 16 6 C -0.51 -13.88 7.62 -34.44 -0.26 -14.15 16 7 H 0.06 1.79 7.82 -52.49 -0.41 1.38 16 8 C 0.06 1.74 5.45 -17.82 -0.10 1.65 16 9 N -0.89 -25.61 12.84 55.43 0.71 -24.90 16 10 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 N -0.52 -11.97 5.10 -223.87 -1.14 -13.11 16 15 C 0.05 0.95 4.89 -1.90 -0.01 0.94 16 16 C -0.13 -2.12 7.06 -24.87 -0.18 -2.30 16 17 C -0.13 -2.30 6.93 -25.37 -0.18 -2.47 16 18 C 0.06 1.24 5.81 -2.75 -0.02 1.23 16 19 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 20 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.08 1.57 6.83 -51.93 -0.35 1.22 16 26 H 0.03 0.76 7.84 -51.93 -0.41 0.35 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 1.00 7.71 -51.93 -0.40 0.60 16 32 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 LS Contribution 259.48 15.07 3.91 3.91 Total: -1.00 -28.87 259.48 -6.66 -35.53 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -5.31 Total: -2.48 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 0.46 Total: -6.20 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.43 Total: -38.01 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.27 Total: -8.87 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.87 -6.66 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.533 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds