Wall clock time and date at job start Mon Mar 30 2020 02:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99868 * 2 1 4 4 C 1.53003 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46486 * 55.00275 * 4 3 2 6 6 C 1.50702 * 109.47433 * 174.99875 * 4 3 2 7 7 H 1.07991 * 119.99812 * 84.93122 * 6 4 3 8 8 C 1.37880 * 119.99855 * 264.93706 * 6 4 3 9 9 N 1.31513 * 120.00283 * 5.13406 * 8 6 4 10 10 Si 1.86794 * 119.99684 * 185.14033 * 8 6 4 11 11 H 1.48504 * 109.47211 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47363 * 119.99996 * 10 8 6 13 13 H 1.48510 * 109.47126 * 239.99912 * 10 8 6 14 14 N 1.46901 * 109.46935 * 295.00218 * 4 3 2 15 15 C 1.48533 * 110.99965 * 63.64069 * 14 4 3 16 16 C 1.54938 * 103.22263 * 159.71658 * 15 14 4 17 17 C 1.54595 * 102.92644 * 322.58653 * 16 15 14 18 18 C 1.47901 * 110.99565 * 181.03686 * 14 4 3 19 19 H 1.08996 * 109.47088 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.46883 * 299.99931 * 1 2 3 21 21 H 1.09002 * 109.47332 * 59.99837 * 1 2 3 22 22 H 1.09004 * 109.47276 * 59.99835 * 3 2 1 23 23 H 1.08999 * 109.47354 * 300.00408 * 3 2 1 24 24 H 0.96995 * 120.00104 * 180.02562 * 9 8 6 25 25 H 1.08996 * 110.66803 * 278.15368 * 15 14 4 26 26 H 1.09001 * 110.66536 * 41.28606 * 15 14 4 27 27 H 1.08997 * 110.72329 * 204.22556 * 16 15 14 28 28 H 1.09007 * 110.72431 * 80.94887 * 16 15 14 29 29 H 1.08998 * 110.30826 * 263.04398 * 17 16 15 30 30 H 1.08995 * 110.31003 * 140.87229 * 17 16 15 31 31 H 1.09000 * 109.91926 * 333.50717 * 18 14 4 32 32 H 1.09007 * 109.91820 * 94.80360 * 18 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 6 4.1480 2.5561 -0.1232 7 1 4.2980 3.1620 0.7580 8 6 4.5168 3.0370 -1.3617 9 7 4.2426 2.3434 -2.4448 10 14 5.4060 4.6738 -1.5009 11 1 5.5935 5.2522 -0.1460 12 1 6.7310 4.4648 -2.1380 13 1 4.5999 5.6062 -2.3294 14 7 3.9768 0.5628 1.2562 15 6 3.4626 -0.8259 1.3719 16 6 4.4123 -1.4699 2.4129 17 6 5.7826 -0.8449 2.0642 18 6 5.4510 0.4521 1.3031 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.6885 1.8464 0.8900 23 1 1.6885 1.8464 -0.8899 24 1 4.5024 2.6816 -3.3160 25 1 2.4352 -0.8266 1.7360 26 1 3.5331 -1.3432 0.4150 27 1 4.4402 -2.5528 2.2916 28 1 4.1127 -1.2019 3.4262 29 1 6.3558 -1.5202 1.4290 30 1 6.3376 -0.6181 2.9744 31 1 5.8520 0.4015 0.2908 32 1 5.8712 1.3092 1.8294 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261116292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:05 Heat of formation + Delta-G solvation = -68.062323 kcal Electronic energy + Delta-G solvation = -13511.308615 eV Core-core repulsion = 11277.863243 eV Total energy + Delta-G solvation = -2233.445372 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.89818 -38.14000 -35.36119 -32.90408 -29.64934 -29.24220 -27.67614 -26.02424 -23.06935 -21.51901 -21.23803 -18.57333 -17.42884 -16.95990 -16.64913 -16.37464 -15.64824 -15.31336 -14.73889 -14.26072 -13.91223 -13.44807 -13.30130 -12.94770 -12.76298 -12.45839 -12.33737 -12.04370 -11.86075 -11.74392 -11.53736 -11.31203 -11.13529 -10.67479 -10.35916 -8.98779 -8.22284 -6.36222 1.38300 1.40066 1.53461 2.36782 2.93761 3.29862 3.55941 4.00492 4.04760 4.26754 4.50149 4.53726 4.61057 4.66425 4.76013 4.81006 4.86246 5.00294 5.02919 5.11206 5.14803 5.25716 5.33859 5.44514 5.54011 5.66180 6.02009 6.33666 6.46193 6.68900 6.89132 7.36567 8.86160 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.014053 C = 0.010051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.555268 B = 1991.930331 C = 2785.186761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.095 3.905 4 C 0.207 3.793 5 H -0.009 1.009 6 C -0.518 4.518 7 H 0.058 0.942 8 C 0.015 3.985 9 N -0.924 5.924 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.277 1.277 14 N -0.525 5.525 15 C 0.046 3.954 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.054 3.946 19 H 0.101 0.899 20 H 0.045 0.955 21 H 0.032 0.968 22 H 0.039 0.961 23 H 0.022 0.978 24 H 0.265 0.735 25 H 0.079 0.921 26 H 0.012 0.988 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.008 0.992 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 -4.922 6.853 8.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.018 3.982 4 C 0.099 3.901 5 H 0.009 0.991 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.203 1.203 14 N -0.250 5.250 15 C -0.081 4.081 16 C -0.153 4.153 17 C -0.163 4.163 18 C -0.074 4.074 19 H 0.119 0.881 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.031 0.969 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.027 0.973 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.827 -4.745 7.073 8.711 hybrid contribution 0.386 0.724 -1.453 1.669 sum -1.441 -4.021 5.620 7.059 Atomic orbital electron populations 1.22839 0.81043 1.03306 0.99880 1.87926 1.20497 1.29393 1.95244 1.22597 0.95179 0.82954 0.97438 1.19353 0.89960 0.94463 0.86336 0.99117 1.21185 1.40539 1.00841 0.93071 0.92347 1.25875 0.96047 1.01271 0.95330 1.70111 1.47349 1.40294 0.98516 0.85418 0.78191 0.79035 0.78524 1.18687 1.20415 1.20291 1.64797 1.07271 1.16902 1.36060 1.23136 0.99487 0.88719 0.96802 1.22516 0.93877 0.99779 0.99108 1.22432 0.97993 0.95414 1.00457 1.22508 0.89361 0.98029 0.97512 0.88081 0.93590 0.94887 0.94322 0.95972 0.92616 0.90279 0.96919 0.89753 0.90216 0.91536 0.89510 0.97330 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.41 -17.80 7.61 -148.98 -1.13 -18.93 16 3 C 0.10 4.67 5.45 71.98 0.39 5.07 16 4 C 0.21 11.09 1.68 44.17 0.07 11.16 16 5 H -0.01 -0.56 7.24 -2.38 -0.02 -0.58 16 6 C -0.52 -29.18 7.62 25.60 0.20 -28.98 16 7 H 0.06 3.29 7.82 -2.92 -0.02 3.27 16 8 C 0.01 0.82 5.45 84.66 0.46 1.28 16 9 N -0.92 -54.99 12.84 21.45 0.28 -54.71 16 10 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 14 N -0.53 -24.41 5.10 -862.20 -4.40 -28.81 16 15 C 0.05 1.86 4.89 86.65 0.42 2.28 16 16 C -0.11 -3.50 7.06 31.80 0.22 -3.27 16 17 C -0.12 -3.98 6.93 31.47 0.22 -3.76 16 18 C 0.05 2.33 5.81 86.45 0.50 2.83 16 19 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 20 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 25 H 0.08 3.10 6.83 -2.39 -0.02 3.09 16 26 H 0.01 0.55 7.84 -2.39 -0.02 0.53 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.01 0.40 7.71 -2.39 -0.02 0.39 16 32 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -63.73 259.48 1.57 -62.15 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.06 Total: 5.74 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 3.74 Total: -11.34 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -4.12 Total: -83.52 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -1.13 Total: -18.93 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -63.73 1.57 -62.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.909 kcal (2) G-P(sol) polarization free energy of solvation -63.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds