Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48539 * 110.99934 * 2 1 4 4 C 1.54940 * 103.22513 * 159.72167 * 3 2 1 5 5 C 1.54590 * 102.92203 * 322.58801 * 4 3 2 6 6 C 1.47900 * 111.00131 * 117.39705 * 2 1 3 7 7 H 1.09002 * 109.91794 * 333.50785 * 6 2 1 8 8 C 1.53003 * 110.08046 * 94.70988 * 6 2 1 9 9 O 1.42900 * 109.47203 * 293.09156 * 8 6 2 10 10 C 1.42896 * 113.99711 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46752 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00462 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00154 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00442 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99673 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47114 * 90.00318 * 15 13 11 17 17 H 1.48496 * 109.47081 * 210.00051 * 15 13 11 18 18 H 1.48500 * 109.47357 * 330.00271 * 15 13 11 19 19 H 1.08999 * 109.46928 * 302.60133 * 1 2 3 20 20 H 1.09003 * 109.47254 * 62.60094 * 1 2 3 21 21 H 1.08994 * 109.47303 * 182.60401 * 1 2 3 22 22 H 1.08998 * 110.66260 * 41.28731 * 3 2 1 23 23 H 1.09004 * 110.66783 * 278.15606 * 3 2 1 24 24 H 1.09004 * 110.72067 * 204.22623 * 4 3 2 25 25 H 1.08997 * 110.72261 * 80.94784 * 4 3 2 26 26 H 1.09005 * 110.30621 * 263.03984 * 5 4 3 27 27 H 1.09000 * 110.31006 * 140.87414 * 5 4 3 28 28 H 1.08998 * 109.46972 * 53.09492 * 8 6 2 29 29 H 1.09000 * 109.46968 * 173.08800 * 8 6 2 30 30 H 1.08994 * 109.47456 * 299.99796 * 10 9 8 31 31 H 1.08997 * 109.47335 * 60.00271 * 10 9 8 32 32 H 0.96997 * 120.00343 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2106 0.5227 5 6 3.2983 0.1053 1.5930 6 6 1.9990 -0.6354 1.2259 7 1 1.2758 -0.5403 2.0359 8 6 2.2975 -2.1131 0.9647 9 8 1.0733 -2.8121 0.7303 10 6 1.2410 -4.2078 0.4738 11 6 -0.1066 -4.8414 0.2427 12 1 -1.0017 -4.2387 0.2877 13 6 -0.1971 -6.1910 -0.0251 14 7 -1.3731 -6.7439 -0.2273 15 14 1.3509 -7.2337 -0.1022 16 1 1.6510 -7.7747 1.2478 17 1 1.1441 -8.3572 -1.0509 18 1 2.4881 -6.3982 -0.5647 19 1 -0.3633 0.5537 0.8657 20 1 -0.3634 0.4729 -0.9124 21 1 -0.3633 -1.0265 0.0467 22 1 1.4237 2.0204 0.6729 23 1 2.0041 1.7978 -1.0096 24 1 3.8123 2.1353 0.9716 25 1 4.1115 0.8837 -0.2788 26 1 3.2137 0.5486 2.5852 27 1 4.1470 -0.5775 1.5539 28 1 2.9414 -2.2046 0.0901 29 1 2.7999 -2.5411 1.8322 30 1 1.8628 -4.3425 -0.4112 31 1 1.7217 -4.6796 1.3308 32 1 -1.4368 -7.6932 -0.4161 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = -46.567326 kcal Electronic energy + Delta-G solvation = -12989.640522 eV Core-core repulsion = 10757.127243 eV Total energy + Delta-G solvation = -2232.513280 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.01820 -36.40642 -32.62046 -31.99991 -30.27768 -27.77477 -25.50891 -23.93488 -21.79251 -21.03824 -19.89980 -16.91282 -16.05608 -15.43132 -15.19750 -14.89282 -14.19398 -13.68030 -13.51415 -13.00063 -12.48467 -12.26803 -12.03532 -11.54906 -11.39607 -11.17202 -11.03880 -10.84707 -10.75044 -10.54705 -10.27990 -9.82380 -9.13119 -8.78493 -8.40261 -8.17915 -6.08603 -4.07048 3.27142 3.34070 3.36694 4.18150 4.38618 4.48496 4.75503 4.97428 5.01649 5.23212 5.38316 5.58895 5.65360 5.69584 5.78381 5.82225 5.84286 5.92443 5.98204 6.12445 6.16598 6.34838 6.54089 6.67927 7.06173 7.16670 7.31262 7.64422 8.08696 8.72162 9.02624 9.51288 11.04496 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058904 B = 0.007769 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.235705 B = 3603.389632 C = 3922.454738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.509 5.509 3 C 0.030 3.970 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.069 3.931 7 H 0.058 0.942 8 C 0.075 3.925 9 O -0.378 6.378 10 C 0.170 3.830 11 C -0.516 4.516 12 H 0.081 0.919 13 C 0.072 3.928 14 N -0.897 5.897 15 Si 0.876 3.124 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.266 1.266 19 H 0.019 0.981 20 H 0.061 0.939 21 H 0.093 0.907 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.003 0.997 31 H -0.004 1.004 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.491 13.942 2.439 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.234 5.234 3 C -0.097 4.097 4 C -0.160 4.160 5 C -0.164 4.164 6 C -0.040 4.040 7 H 0.076 0.924 8 C -0.003 4.003 9 O -0.297 6.297 10 C 0.095 3.905 11 C -0.554 4.554 12 H 0.099 0.901 13 C -0.130 4.130 14 N -0.535 5.535 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.191 1.191 19 H 0.038 0.962 20 H 0.080 0.920 21 H 0.111 0.889 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.021 0.979 31 H 0.013 0.987 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.354 13.555 1.928 16.582 hybrid contribution 0.648 -0.406 0.671 1.017 sum 10.003 13.149 2.599 16.725 Atomic orbital electron populations 1.22557 0.86938 1.04074 0.99432 1.64588 1.09041 1.13178 1.36557 1.23271 0.94880 0.90846 1.00748 1.22467 0.96909 0.98176 0.98497 1.22384 0.97572 0.97687 0.98748 1.22390 0.95821 0.94095 0.91682 0.92400 1.22351 0.88862 0.90469 0.98629 1.87863 1.27563 1.22640 1.91628 1.20563 0.98352 0.77937 0.93696 1.20897 0.92389 0.93789 1.48357 0.90052 1.24767 0.96129 0.97373 0.94739 1.69874 1.23093 1.12141 1.48436 0.86850 0.84026 0.80443 0.78442 1.20007 1.20803 1.19051 0.96241 0.91997 0.88870 0.94167 0.90296 0.91331 0.90751 0.91363 0.90760 0.93650 0.94397 0.97941 0.98665 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.31 60.06 0.56 0.85 16 2 N -0.51 -8.12 5.18 -230.78 -1.20 -9.32 16 3 C 0.03 0.37 6.56 -1.89 -0.01 0.36 16 4 C -0.12 -1.31 7.06 -24.87 -0.18 -1.48 16 5 C -0.13 -1.49 6.57 -25.38 -0.17 -1.66 16 6 C 0.07 1.08 2.79 -66.64 -0.19 0.90 16 7 H 0.06 0.94 7.73 -51.93 -0.40 0.54 16 8 C 0.08 1.40 5.36 37.16 0.20 1.60 16 9 O -0.38 -9.03 8.93 -35.23 -0.31 -9.35 16 10 C 0.17 4.44 4.76 36.01 0.17 4.61 16 11 C -0.52 -15.62 9.99 -34.44 -0.34 -15.96 16 12 H 0.08 2.67 8.06 -52.49 -0.42 2.25 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 15 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 19 H 0.02 0.28 8.00 -51.93 -0.42 -0.13 16 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.09 1.81 6.83 -51.93 -0.35 1.46 16 22 H 0.04 0.46 7.96 -51.93 -0.41 0.05 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.00 0.07 7.20 -51.93 -0.37 -0.30 16 31 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 32 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 260.48 15.07 3.93 3.93 Total: -1.00 -31.91 260.48 -6.83 -38.74 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -5.30 Total: -5.15 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.05 Total: -8.75 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: -0.42 Total: -36.55 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.31 Total: -9.35 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.91 -6.83 -38.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.825 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds