Wall clock time and date at job start Mon Mar 30 2020 02:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 O 1.42897 * 109.46983 * 65.31966 * 6 5 4 8 8 C 1.34928 * 116.99983 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00173 * 0.02562 * 8 7 6 10 10 C 1.38639 * 120.00156 * 179.97438 * 8 7 6 11 11 N 1.31576 * 119.99782 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00001 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46799 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46738 * 119.99958 * 12 10 8 15 15 H 1.48502 * 109.47102 * 240.00227 * 12 10 8 16 16 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 17 17 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 18 18 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 19 19 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 20 20 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 21 21 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 22 22 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 23 23 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 24 24 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 25 25 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 26 26 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 27 27 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 28 28 H 0.97005 * 120.00197 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.50326 * 182.41022 * 16 5 4 30 30 H 1.08996 * 109.53714 * 62.30612 * 16 5 4 31 31 H 1.09005 * 109.46673 * 294.18102 * 17 2 1 32 32 H 1.09003 * 109.46587 * 54.14643 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 8 6.2082 1.7498 0.9512 8 6 7.5479 1.8442 0.8213 9 1 8.1369 0.9570 0.6419 10 6 8.1682 3.0804 0.9172 11 7 7.4505 4.1614 1.1353 12 14 10.0229 3.2112 0.7367 13 1 10.5934 1.8611 0.4983 14 1 10.3472 4.0950 -0.4118 15 1 10.6021 3.7817 1.9794 16 6 3.5182 -0.8715 1.0210 17 6 1.9952 -0.7707 1.1338 18 1 -0.3634 0.4471 0.9253 19 1 -0.3633 -1.0249 -0.0754 20 1 -0.3633 0.5778 -0.8499 21 1 1.5634 1.9257 -0.8330 22 1 1.7324 1.8608 0.9376 23 1 3.9099 2.3512 -0.1310 24 1 3.7820 0.8572 -1.0905 25 1 3.8886 1.0355 1.9561 26 1 6.0519 -0.2007 1.6142 27 1 5.8648 0.0298 -0.1408 28 1 7.8845 5.0263 1.2028 29 1 3.9098 -1.4302 1.8710 30 1 3.7814 -1.3842 0.0959 31 1 1.7324 -0.2708 2.0661 32 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261151358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:55 Heat of formation + Delta-G solvation = -45.136362 kcal Electronic energy + Delta-G solvation = -13002.152557 eV Core-core repulsion = 10769.701329 eV Total energy + Delta-G solvation = -2232.451228 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.83092 -36.19751 -33.53611 -31.45941 -30.53006 -27.69470 -24.81005 -23.64478 -22.76468 -21.08731 -19.27350 -17.39334 -15.58962 -15.23573 -14.89439 -14.49154 -14.20326 -13.94364 -13.31900 -12.94582 -12.52420 -12.23607 -12.15593 -11.59578 -11.43090 -11.19358 -10.93343 -10.86631 -10.29515 -10.16996 -10.02139 -9.75243 -9.36707 -9.03842 -8.20928 -7.90476 -5.90623 -3.53310 3.33453 3.36743 3.41237 4.08339 4.34746 5.05729 5.10794 5.18441 5.32918 5.42573 5.48756 5.53915 5.70296 5.78763 5.82553 5.88549 5.99220 6.10088 6.16735 6.34457 6.38049 6.51924 6.73376 6.74351 6.92329 7.00374 7.22504 7.27610 7.53199 8.48098 9.53385 10.24247 11.30911 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.081360 B = 0.007031 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.068352 B = 3981.202886 C = 4199.942732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.105 4.105 5 C -0.083 4.083 6 C 0.080 3.920 7 O -0.295 6.295 8 C -0.357 4.357 9 H 0.061 0.939 10 C 0.021 3.979 11 N -0.890 5.890 12 Si 0.923 3.077 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.283 1.283 16 C -0.110 4.110 17 C 0.059 3.941 18 H 0.021 0.979 19 H 0.064 0.936 20 H 0.065 0.935 21 H 0.070 0.930 22 H 0.031 0.969 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.020 0.980 27 H 0.022 0.978 28 H 0.256 0.744 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 -8.120 -1.099 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.142 4.142 5 C -0.101 4.101 6 C 0.002 3.998 7 O -0.210 6.210 8 C -0.436 4.436 9 H 0.079 0.921 10 C -0.177 4.177 11 N -0.534 5.534 12 Si 0.751 3.249 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.148 4.148 17 C -0.069 4.069 18 H 0.040 0.960 19 H 0.083 0.917 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.049 0.951 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.715 -8.020 -1.477 13.465 hybrid contribution 0.776 0.254 0.646 1.042 sum -9.939 -7.766 -0.830 12.640 Atomic orbital electron populations 1.22334 0.87998 1.01724 1.00226 1.61960 1.06928 1.14663 1.43471 1.22173 0.96817 0.88091 1.00075 1.21538 0.92194 1.02080 0.98418 1.21093 0.94909 0.94863 0.99276 1.22102 0.91497 0.88613 0.97603 1.85611 1.21333 1.22559 1.91546 1.20860 0.81087 0.93642 1.48031 0.92108 1.24938 0.98692 0.94726 0.99295 1.70029 1.34360 0.97894 1.51105 0.85914 0.83265 0.78007 0.77717 1.19965 1.20913 1.20941 1.21575 0.93646 0.97357 1.02175 1.22060 0.95924 0.97582 0.91304 0.96009 0.91737 0.91581 0.91119 0.95052 0.89841 0.91733 0.91305 0.96247 0.95995 0.93371 0.91700 0.91216 0.95079 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.59 60.07 0.58 0.86 16 2 N -0.55 -7.65 4.91 -242.95 -1.19 -8.84 16 3 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 4 C -0.10 -1.92 5.25 -26.65 -0.14 -2.06 16 5 C -0.08 -1.56 2.49 -90.50 -0.23 -1.79 16 6 C 0.08 1.81 5.40 37.16 0.20 2.01 16 7 O -0.30 -8.63 9.38 -16.50 -0.15 -8.79 16 8 C -0.36 -10.76 9.89 30.88 0.31 -10.45 16 9 H 0.06 1.74 7.77 -52.49 -0.41 1.33 16 10 C 0.02 0.64 5.49 -17.51 -0.10 0.54 16 11 N -0.89 -28.34 13.67 55.48 0.76 -27.58 16 12 Si 0.92 22.46 29.55 -169.99 -5.02 17.43 16 13 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.11 -1.65 5.38 -26.65 -0.14 -1.79 16 17 C 0.06 0.79 5.46 -3.83 -0.02 0.77 16 18 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 19 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 20 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 21 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 22 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 1.77 7.90 -51.93 -0.41 1.36 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 LS Contribution 262.97 15.07 3.96 3.96 Total: -1.00 -32.86 262.97 -6.66 -39.52 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -5.44 Total: -4.63 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 0.44 Total: -11.07 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.43 Total: -36.43 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.15 Total: -8.79 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.86 -6.66 -39.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.618 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds