Wall clock time and date at job start Mon Mar 30 2020 02:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 O 1.42897 * 109.46983 * 65.31966 * 6 5 4 8 8 C 1.34928 * 116.99983 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00173 * 0.02562 * 8 7 6 10 10 C 1.38639 * 120.00156 * 179.97438 * 8 7 6 11 11 N 1.31576 * 119.99782 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00001 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46799 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46738 * 119.99958 * 12 10 8 15 15 H 1.48502 * 109.47102 * 240.00227 * 12 10 8 16 16 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 17 17 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 18 18 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 19 19 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 20 20 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 21 21 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 22 22 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 23 23 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 24 24 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 25 25 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 26 26 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 27 27 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 28 28 H 0.97005 * 120.00197 * 179.97438 * 11 10 8 29 29 H 1.09001 * 109.50326 * 182.41022 * 16 5 4 30 30 H 1.08996 * 109.53714 * 62.30612 * 16 5 4 31 31 H 1.09005 * 109.46673 * 294.18102 * 17 2 1 32 32 H 1.09003 * 109.46587 * 54.14643 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 8 6.2082 1.7498 0.9512 8 6 7.5479 1.8442 0.8213 9 1 8.1369 0.9570 0.6419 10 6 8.1682 3.0804 0.9172 11 7 7.4505 4.1614 1.1353 12 14 10.0229 3.2112 0.7367 13 1 10.5934 1.8611 0.4983 14 1 10.3472 4.0950 -0.4118 15 1 10.6021 3.7817 1.9794 16 6 3.5182 -0.8715 1.0210 17 6 1.9952 -0.7707 1.1338 18 1 -0.3634 0.4471 0.9253 19 1 -0.3633 -1.0249 -0.0754 20 1 -0.3633 0.5778 -0.8499 21 1 1.5634 1.9257 -0.8330 22 1 1.7324 1.8608 0.9376 23 1 3.9099 2.3512 -0.1310 24 1 3.7820 0.8572 -1.0905 25 1 3.8886 1.0355 1.9561 26 1 6.0519 -0.2007 1.6142 27 1 5.8648 0.0298 -0.1408 28 1 7.8845 5.0263 1.2028 29 1 3.9098 -1.4302 1.8710 30 1 3.7814 -1.3842 0.0959 31 1 1.7324 -0.2708 2.0661 32 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261151358.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:55 Heat of formation + Delta-G solvation = -68.455559 kcal Electronic energy + Delta-G solvation = -13003.163753 eV Core-core repulsion = 10769.701329 eV Total energy + Delta-G solvation = -2233.462425 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.13931 -38.15366 -35.05817 -33.62568 -31.79164 -29.10868 -26.73500 -25.24645 -24.03829 -22.49869 -20.69361 -19.58203 -17.39304 -16.78630 -16.09910 -15.95572 -15.84238 -15.49169 -15.06458 -14.29776 -14.16965 -13.71200 -13.34427 -13.29017 -12.89459 -12.82620 -12.48499 -12.13156 -12.07832 -11.79127 -11.64486 -11.27414 -11.25876 -11.00760 -10.14956 -9.28472 -8.18606 -5.88215 1.39022 1.45017 1.55888 2.32852 3.01671 3.14299 3.58242 3.82755 3.87858 4.17945 4.30793 4.39909 4.47000 4.56434 4.62478 4.65140 4.70902 4.81613 4.85469 4.89987 5.01681 5.03683 5.08167 5.17926 5.25329 5.38756 5.48481 6.10610 6.18520 6.20805 7.24377 8.06457 9.06739 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.081360 B = 0.007031 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.068352 B = 3981.202886 C = 4199.942732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.065 3.935 4 C -0.100 4.100 5 C -0.078 4.078 6 C 0.074 3.926 7 O -0.334 6.334 8 C -0.380 4.380 9 H 0.070 0.930 10 C -0.043 4.043 11 N -0.940 5.940 12 Si 1.007 2.993 13 H -0.258 1.258 14 H -0.275 1.275 15 H -0.274 1.274 16 C -0.101 4.101 17 C 0.061 3.939 18 H 0.026 0.974 19 H 0.083 0.917 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.027 0.973 23 H 0.042 0.958 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.261 0.739 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 -9.545 -1.298 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.280 5.280 3 C -0.063 4.063 4 C -0.138 4.138 5 C -0.097 4.097 6 C -0.003 4.003 7 O -0.250 6.250 8 C -0.459 4.459 9 H 0.088 0.912 10 C -0.235 4.235 11 N -0.585 5.585 12 Si 0.829 3.171 13 H -0.181 1.181 14 H -0.200 1.200 15 H -0.200 1.200 16 C -0.139 4.139 17 C -0.067 4.067 18 H 0.044 0.956 19 H 0.102 0.898 20 H 0.092 0.908 21 H 0.101 0.899 22 H 0.045 0.955 23 H 0.061 0.939 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.944 -9.476 -1.676 14.574 hybrid contribution 0.776 0.650 0.703 1.232 sum -10.168 -8.826 -0.973 13.500 Atomic orbital electron populations 1.22418 0.85783 1.03223 1.00824 1.61957 1.08924 1.13331 1.43836 1.22006 0.94293 0.89566 1.00411 1.21416 0.94781 0.99501 0.98138 1.21094 0.92445 0.97655 0.98511 1.22401 0.93797 0.86360 0.97739 1.85563 1.21363 1.26277 1.91827 1.21387 0.81820 0.94436 1.48220 0.91227 1.26246 1.04839 0.93998 0.98466 1.70204 1.37226 0.98717 1.52326 0.84681 0.75591 0.78815 0.78034 1.18146 1.20014 1.19990 1.21533 0.95006 0.94392 1.02989 1.22099 0.94441 0.99044 0.91116 0.95585 0.89829 0.90791 0.89851 0.95502 0.93902 0.92008 0.92943 0.95678 0.95779 0.93058 0.90230 0.90960 0.95122 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.59 127.69 1.22 1.70 16 2 N -0.56 -14.30 4.91 -922.54 -4.53 -18.83 16 3 C 0.07 1.95 5.46 86.33 0.47 2.42 16 4 C -0.10 -3.79 5.25 30.65 0.16 -3.63 16 5 C -0.08 -2.99 2.49 -10.71 -0.03 -3.02 16 6 C 0.07 3.44 5.40 71.98 0.39 3.83 16 7 O -0.33 -20.27 9.38 -81.97 -0.77 -21.03 16 8 C -0.38 -23.32 9.89 67.92 0.67 -22.65 16 9 H 0.07 4.00 7.77 -2.91 -0.02 3.98 16 10 C -0.04 -2.58 5.49 84.83 0.47 -2.12 16 11 N -0.94 -61.28 13.67 21.61 0.30 -60.99 16 12 Si 1.01 46.13 29.55 68.60 2.03 48.15 16 13 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 C -0.10 -2.89 5.38 30.65 0.16 -2.72 16 17 C 0.06 1.47 5.46 86.33 0.47 1.94 16 18 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 19 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 20 H 0.07 1.30 8.09 -2.38 -0.02 1.28 16 21 H 0.08 2.26 8.09 -2.38 -0.02 2.24 16 22 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 23 H 0.04 1.93 7.90 -2.39 -0.02 1.91 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.03 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.10 1.88 8.12 -2.39 -0.02 1.86 16 Total: -1.00 -71.96 262.97 2.07 -69.89 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.06 Total: 7.05 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.99 Total: -24.24 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -4.24 Total: -79.82 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.77 Total: -21.03 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.96 2.07 -69.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261151358.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.434 kcal (2) G-P(sol) polarization free energy of solvation -71.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds