Wall clock time and date at job start Mon Mar 30 2020 02:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30706 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47099 * 270.00271 * 3 2 1 5 5 H 1.48502 * 109.47144 * 30.00069 * 3 2 1 6 6 H 1.48499 * 109.46741 * 149.99818 * 3 2 1 7 7 C 1.40046 * 119.99995 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.41390 * 120.00126 * 359.97438 * 7 2 1 10 10 N 1.33479 * 119.19618 * 180.02562 * 9 7 2 11 11 C 1.32405 * 120.77439 * 180.02562 * 10 9 7 12 12 O 1.35570 * 120.42098 * 180.02562 * 11 10 9 13 13 C 1.39821 * 119.16267 * 0.27100 * 11 10 9 14 14 F 1.35103 * 120.74302 * 179.72712 * 13 11 10 15 15 C 1.39827 * 118.51759 * 359.49324 * 13 11 10 16 16 O 1.35572 * 120.42025 * 180.23646 * 15 13 11 17 17 N 1.32409 * 119.16186 * 0.50590 * 15 13 11 18 18 H 0.97001 * 120.00198 * 0.02562 * 1 2 3 19 19 H 0.96700 * 114.00495 * 89.99712 * 12 11 10 20 20 H 0.96700 * 113.99996 * 270.27326 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.4885 2.0465 -1.4001 5 1 1.4385 2.6527 0.7001 6 1 3.5386 1.4401 0.7001 7 6 2.0073 -1.2128 -0.0005 8 1 3.0874 -1.2129 -0.0001 9 6 1.3004 -2.4373 -0.0005 10 7 1.9839 -3.5838 -0.0005 11 6 1.3538 -4.7483 -0.0011 12 8 2.0552 -5.9084 -0.0005 13 6 -0.0443 -4.7664 -0.0074 14 9 -0.7198 -5.9364 -0.0136 15 6 -0.7278 -3.5465 -0.0021 16 8 -2.0832 -3.5191 -0.0031 17 7 -0.0344 -2.4185 -0.0015 18 1 -0.4850 0.8400 -0.0004 19 1 2.2581 -6.2450 0.8830 20 1 -2.4758 -3.5111 -0.8868 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231211.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:29 Heat of formation + Delta-G solvation = -79.989647 kcal Electronic energy + Delta-G solvation = -12473.726942 eV Core-core repulsion = 9779.211957 eV Total energy + Delta-G solvation = -2694.514985 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.038 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.54247 -39.35558 -37.17393 -36.08624 -33.70793 -30.99594 -29.55312 -26.31048 -22.77439 -22.12481 -19.05814 -17.55929 -17.04482 -16.88203 -16.06243 -15.25584 -14.83080 -14.46151 -13.60055 -13.26315 -12.49523 -12.26229 -11.85704 -11.48536 -11.31855 -11.13129 -10.54617 -10.43471 -9.57180 -9.55940 -9.06163 -7.96009 -7.68632 -6.81750 -5.00546 2.10928 2.27900 2.94422 2.94883 3.00152 3.71024 4.25051 4.32269 4.73167 5.43443 5.44329 6.05463 6.17431 6.44140 6.81115 7.09634 7.80910 7.90934 8.14333 8.26332 8.48222 8.64492 9.75714 9.94712 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.052462 B = 0.011983 C = 0.009806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.588664 B = 2335.999313 C = 2854.757268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.696 5.696 2 C 0.059 3.941 3 Si 0.927 3.073 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.375 4.375 8 H 0.103 0.897 9 C 0.406 3.594 10 N -0.591 5.591 11 C 0.362 3.638 12 O -0.485 6.485 13 C -0.203 4.203 14 F -0.151 7.151 15 C 0.358 3.642 16 O -0.482 6.482 17 N -0.506 5.506 18 H 0.282 0.718 19 H 0.393 0.607 20 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -0.697 0.008 0.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.170 4.170 3 Si 0.750 3.250 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.409 4.409 8 H 0.121 0.879 9 C 0.172 3.828 10 N -0.322 5.322 11 C 0.167 3.833 12 O -0.290 6.290 13 C -0.235 4.235 14 F -0.131 7.131 15 C 0.161 3.839 16 O -0.288 6.288 17 N -0.234 5.234 18 H 0.093 0.907 19 H 0.249 0.751 20 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.338 0.335 0.013 0.477 hybrid contribution -0.423 -0.512 -0.001 0.664 sum -0.085 -0.177 0.012 0.196 Atomic orbital electron populations 1.70126 1.07462 1.29065 1.24982 1.26231 0.95194 1.01880 0.93681 0.85987 0.80309 0.79079 0.79642 1.18944 1.19735 1.18009 1.19499 0.95250 0.87111 1.39040 0.87891 1.19455 0.83896 0.89930 0.89487 1.68290 1.41214 0.97270 1.25467 1.19250 0.84871 0.86004 0.93128 1.84660 1.75778 1.35305 1.33306 1.19367 0.90394 0.82250 1.31530 1.91284 1.79967 1.45636 1.96213 1.19697 0.84479 0.87062 0.92687 1.84649 1.15016 1.95936 1.33164 1.69009 1.08699 1.25391 1.20272 0.90664 0.75077 0.75133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.38 11.41 55.55 0.63 -16.75 14 2 C 0.06 1.40 5.50 -17.35 -0.10 1.31 14 3 Si 0.93 17.22 29.56 -169.99 -5.02 12.20 14 4 H -0.26 -4.84 7.11 56.52 0.40 -4.43 14 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 14 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 14 7 C -0.38 -9.68 9.36 -37.71 -0.35 -10.03 14 8 H 0.10 2.51 7.85 -52.48 -0.41 2.09 14 9 C 0.41 11.14 7.36 -158.33 -1.17 9.97 14 10 N -0.59 -15.59 10.37 -12.72 -0.13 -15.72 14 11 C 0.36 8.81 7.84 -16.71 -0.13 8.68 14 12 O -0.48 -9.93 13.48 -18.40 -0.25 -10.18 14 13 C -0.20 -4.96 7.44 -38.40 -0.29 -5.24 14 14 F -0.15 -3.49 17.08 2.25 0.04 -3.45 14 15 C 0.36 8.98 7.84 -16.71 -0.13 8.84 14 16 O -0.48 -10.49 13.48 -18.41 -0.25 -10.74 14 17 N -0.51 -13.81 7.88 -12.72 -0.10 -13.91 14 18 H 0.28 6.27 8.29 -40.82 -0.34 5.93 14 19 H 0.39 5.81 9.06 45.56 0.41 6.23 14 20 H 0.39 6.39 9.06 45.56 0.41 6.81 14 LS Contribution 204.18 15.07 3.08 3.08 Total: -1.00 -31.26 204.18 -2.89 -34.14 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.28 Total: 7.81 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -2.16 Total: 13.52 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.40 Total: -46.37 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.50 Total: -20.92 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.02 Total: 12.20 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -31.26 -2.89 -34.14 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231211.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.848 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds