Wall clock time and date at job start Mon Mar 30 2020 02:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42894 * 109.47129 * 2 1 4 4 C 1.42901 * 114.00021 * 176.00732 * 3 2 1 5 5 C 1.50695 * 110.28740 * 57.27704 * 4 3 2 6 6 H 1.08002 * 120.00336 * 240.10078 * 5 4 3 7 7 C 1.37879 * 119.99970 * 60.10406 * 5 4 3 8 8 N 1.31519 * 120.00305 * 353.66821 * 7 5 4 9 9 Si 1.86803 * 120.00102 * 173.66848 * 7 5 4 10 10 H 1.48495 * 109.47234 * 59.99900 * 9 7 5 11 11 H 1.48503 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47236 * 299.99717 * 9 7 5 13 13 C 1.54259 * 110.32323 * 295.14767 * 4 3 2 14 14 C 1.54381 * 105.06428 * 241.10290 * 13 4 3 15 15 N 1.48560 * 104.58886 * 23.85600 * 14 13 4 16 16 C 1.46904 * 110.99361 * 200.95795 * 15 14 13 17 17 C 1.48558 * 104.22542 * 320.51118 * 15 14 13 18 18 H 1.08996 * 109.46613 * 59.99762 * 1 2 3 19 19 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.46843 * 300.00018 * 1 2 3 21 21 H 1.08995 * 109.46843 * 239.99981 * 2 1 3 22 22 H 1.09002 * 109.46934 * 119.99639 * 2 1 3 23 23 H 0.96991 * 120.00148 * 180.02562 * 8 7 5 24 24 H 1.09001 * 110.32667 * 0.02562 * 13 4 3 25 25 H 1.09011 * 110.31823 * 122.10338 * 13 4 3 26 26 H 1.08994 * 110.40814 * 142.63486 * 14 13 4 27 27 H 1.09002 * 110.40794 * 265.08119 * 14 13 4 28 28 H 1.09000 * 109.46898 * 59.88058 * 16 15 14 29 29 H 1.09007 * 109.46996 * 179.87190 * 16 15 14 30 30 H 1.08990 * 109.47384 * 299.87434 * 16 15 14 31 31 H 1.09000 * 110.41509 * 280.71007 * 17 15 14 32 32 H 1.08999 * 110.41314 * 158.26244 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4280 1.4611 0.0909 5 6 4.0854 0.7137 -1.0405 6 1 4.7648 -0.0987 -0.8284 7 6 3.8198 1.0670 -2.3465 8 7 2.9008 1.9703 -2.6095 9 14 4.7651 0.2626 -3.7425 10 1 4.5367 -1.2044 -3.7142 11 1 4.2954 0.8122 -5.0397 12 1 6.2150 0.5410 -3.5835 13 6 3.9229 0.9216 1.4487 14 6 4.6017 2.1261 2.1357 15 7 3.9777 3.3174 1.5045 16 6 4.8274 4.5047 1.6666 17 6 3.8492 2.9463 0.0717 18 1 -0.3632 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 2.7136 2.2186 -3.5282 24 1 3.0816 0.5695 2.0456 25 1 4.6415 0.1161 1.2967 26 1 4.4017 2.1148 3.2070 27 1 5.6754 2.1151 1.9482 28 1 5.7952 4.3255 1.1983 29 1 4.3481 5.3618 1.1935 30 1 4.9693 4.7078 2.7280 31 1 4.8052 3.0637 -0.4386 32 1 3.0827 3.5526 -0.4108 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261256149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:51 Heat of formation + Delta-G solvation = -41.741257 kcal Electronic energy + Delta-G solvation = -13757.999082 eV Core-core repulsion = 11525.695077 eV Total energy + Delta-G solvation = -2232.304005 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.33705 -35.55702 -32.54163 -30.80048 -29.54610 -27.37196 -25.62767 -23.62894 -21.67739 -20.13035 -19.17238 -16.87370 -15.32417 -14.64002 -14.38400 -14.06393 -13.88595 -13.25677 -13.03710 -12.26225 -12.02720 -11.81715 -11.35031 -11.23043 -10.95502 -10.88060 -10.56104 -10.44152 -10.39001 -10.30322 -9.95386 -9.51254 -8.76947 -8.56983 -7.81429 -7.57006 -6.01011 -4.17357 3.26960 3.32905 3.34940 4.36773 4.93679 5.13375 5.38343 5.68431 5.76894 5.91714 6.05620 6.07569 6.18249 6.24368 6.30433 6.41805 6.54377 6.63039 6.73328 6.89268 6.91115 7.00821 7.20369 7.27529 7.51482 7.71549 7.79485 7.91903 8.22465 8.82584 9.15929 9.55257 11.01373 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.016278 C = 0.012040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.251290 B = 1719.670533 C = 2324.965621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.078 3.922 3 O -0.365 6.365 4 C 0.244 3.756 5 C -0.558 4.558 6 H 0.057 0.943 7 C 0.082 3.918 8 N -0.851 5.851 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C -0.149 4.149 14 C 0.038 3.962 15 N -0.525 5.525 16 C 0.018 3.982 17 C 0.072 3.928 18 H 0.056 0.944 19 H 0.050 0.950 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.018 0.982 23 H 0.261 0.739 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -0.331 5.057 5.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.001 3.999 3 O -0.284 6.284 4 C 0.205 3.795 5 C -0.596 4.596 6 H 0.075 0.925 7 C -0.125 4.125 8 N -0.486 5.486 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C -0.187 4.187 14 C -0.090 4.090 15 N -0.249 5.249 16 C -0.132 4.132 17 C -0.055 4.055 18 H 0.076 0.924 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.037 0.963 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.321 0.100 5.138 5.149 hybrid contribution 1.579 -0.809 -1.198 2.140 sum 1.900 -0.709 3.941 4.432 Atomic orbital electron populations 1.21709 0.96620 1.00049 1.01863 1.21840 0.92264 0.87103 0.98721 1.87848 1.23021 1.23371 1.94195 1.19526 0.79335 0.91255 0.89345 1.21445 1.28575 1.18725 0.90896 0.92520 1.25015 0.94138 0.94725 0.98587 1.70094 1.28773 1.30257 1.19444 0.86818 0.80572 0.79877 0.81684 1.20179 1.21167 1.20212 1.23031 0.99591 0.96704 0.99354 1.22960 0.96107 0.91721 0.98187 1.65462 1.43118 1.02505 1.13844 1.22422 0.95287 0.94923 1.00543 1.22950 0.99822 0.97618 0.85125 0.92441 0.93077 0.93320 0.93422 0.96341 0.92939 0.92361 0.92052 0.91920 0.94868 0.96086 0.91919 0.92547 0.93834 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 37.16 0.38 -2.38 16 2 C 0.08 1.78 6.01 37.16 0.22 2.00 16 3 O -0.37 -9.56 9.27 -35.23 -0.33 -9.89 16 4 C 0.24 6.16 0.63 -90.39 -0.06 6.11 16 5 C -0.56 -14.99 6.63 -34.44 -0.23 -15.22 16 6 H 0.06 1.51 7.37 -52.49 -0.39 1.13 16 7 C 0.08 2.22 5.25 -17.82 -0.09 2.13 16 8 N -0.85 -23.94 12.13 55.43 0.67 -23.26 16 9 Si 0.88 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 13 C -0.15 -3.24 5.81 -25.35 -0.15 -3.39 16 14 C 0.04 0.76 6.49 -2.18 -0.01 0.74 16 15 N -0.53 -11.15 5.66 -238.23 -1.35 -12.50 16 16 C 0.02 0.31 9.53 60.07 0.57 0.88 16 17 C 0.07 1.76 4.97 -2.18 -0.01 1.75 16 18 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 20 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 21 H 0.05 1.18 7.27 -51.93 -0.38 0.80 16 22 H 0.02 0.40 6.62 -51.93 -0.34 0.05 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.06 1.24 6.83 -51.93 -0.35 0.88 16 25 H 0.06 1.30 7.43 -51.92 -0.39 0.92 16 26 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.03 0.63 7.97 -51.93 -0.41 0.21 16 28 H 0.02 0.35 7.97 -51.93 -0.41 -0.06 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 1.10 7.62 -51.93 -0.40 0.70 16 32 H 0.08 2.24 8.02 -51.93 -0.42 1.82 16 LS Contribution 257.80 15.07 3.88 3.88 Total: -1.00 -28.70 257.80 -6.67 -35.37 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.16 Total: -1.97 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 0.63 Total: -7.39 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.68 Total: -35.76 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.33 Total: -9.89 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.70 -6.67 -35.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.373 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds