Wall clock time and date at job start Mon Mar 30 2020 02:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42894 * 109.47129 * 2 1 4 4 C 1.42901 * 114.00021 * 176.00732 * 3 2 1 5 5 C 1.50695 * 110.28740 * 57.27704 * 4 3 2 6 6 H 1.08002 * 120.00336 * 240.10078 * 5 4 3 7 7 C 1.37879 * 119.99970 * 60.10406 * 5 4 3 8 8 N 1.31519 * 120.00305 * 353.66821 * 7 5 4 9 9 Si 1.86803 * 120.00102 * 173.66848 * 7 5 4 10 10 H 1.48495 * 109.47234 * 59.99900 * 9 7 5 11 11 H 1.48503 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47236 * 299.99717 * 9 7 5 13 13 C 1.54259 * 110.32323 * 295.14767 * 4 3 2 14 14 C 1.54381 * 105.06428 * 241.10290 * 13 4 3 15 15 N 1.48560 * 104.58886 * 23.85600 * 14 13 4 16 16 C 1.46904 * 110.99361 * 200.95795 * 15 14 13 17 17 C 1.48558 * 104.22542 * 320.51118 * 15 14 13 18 18 H 1.08996 * 109.46613 * 59.99762 * 1 2 3 19 19 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 20 20 H 1.08995 * 109.46843 * 300.00018 * 1 2 3 21 21 H 1.08995 * 109.46843 * 239.99981 * 2 1 3 22 22 H 1.09002 * 109.46934 * 119.99639 * 2 1 3 23 23 H 0.96991 * 120.00148 * 180.02562 * 8 7 5 24 24 H 1.09001 * 110.32667 * 0.02562 * 13 4 3 25 25 H 1.09011 * 110.31823 * 122.10338 * 13 4 3 26 26 H 1.08994 * 110.40814 * 142.63486 * 14 13 4 27 27 H 1.09002 * 110.40794 * 265.08119 * 14 13 4 28 28 H 1.09000 * 109.46898 * 59.88058 * 16 15 14 29 29 H 1.09007 * 109.46996 * 179.87190 * 16 15 14 30 30 H 1.08990 * 109.47384 * 299.87434 * 16 15 14 31 31 H 1.09000 * 110.41509 * 280.71007 * 17 15 14 32 32 H 1.08999 * 110.41314 * 158.26244 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4280 1.4611 0.0909 5 6 4.0854 0.7137 -1.0405 6 1 4.7648 -0.0987 -0.8284 7 6 3.8198 1.0670 -2.3465 8 7 2.9008 1.9703 -2.6095 9 14 4.7651 0.2626 -3.7425 10 1 4.5367 -1.2044 -3.7142 11 1 4.2954 0.8122 -5.0397 12 1 6.2150 0.5410 -3.5835 13 6 3.9229 0.9216 1.4487 14 6 4.6017 2.1261 2.1357 15 7 3.9777 3.3174 1.5045 16 6 4.8274 4.5047 1.6666 17 6 3.8492 2.9463 0.0717 18 1 -0.3632 0.5139 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 2.7136 2.2186 -3.5282 24 1 3.0816 0.5695 2.0456 25 1 4.6415 0.1161 1.2967 26 1 4.4017 2.1148 3.2070 27 1 5.6754 2.1151 1.9482 28 1 5.7952 4.3255 1.1983 29 1 4.3481 5.3618 1.1935 30 1 4.9693 4.7078 2.7280 31 1 4.8052 3.0637 -0.4386 32 1 3.0827 3.5526 -0.4108 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256149.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:51 Heat of formation + Delta-G solvation = -61.742833 kcal Electronic energy + Delta-G solvation = -13758.866416 eV Core-core repulsion = 11525.695077 eV Total energy + Delta-G solvation = -2233.171339 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.12768 -37.34475 -34.55333 -32.51986 -31.23842 -29.21526 -27.43714 -25.38620 -23.38666 -21.84177 -21.04624 -18.85650 -17.10765 -16.65239 -16.06224 -15.82994 -15.61966 -14.92241 -14.75550 -14.08921 -13.60935 -13.41112 -13.17260 -13.00350 -12.82538 -12.53354 -12.34907 -12.16304 -12.14909 -11.99173 -11.72270 -11.36560 -10.71203 -10.61446 -9.69409 -9.29216 -8.06470 -6.29035 1.39381 1.40644 1.47701 2.39929 3.11705 3.33281 3.54770 4.08779 4.16519 4.38056 4.47030 4.59031 4.61860 4.67191 4.77767 4.82551 4.93274 4.97305 4.99281 5.11658 5.20668 5.33468 5.41523 5.44357 5.61210 5.75457 5.90761 6.23055 6.28169 6.78474 7.22410 7.49410 8.94979 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.016278 C = 0.012040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.251290 B = 1719.670533 C = 2324.965621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.075 3.925 3 O -0.390 6.390 4 C 0.228 3.772 5 C -0.569 4.569 6 H 0.052 0.948 7 C 0.039 3.961 8 N -0.880 5.880 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.271 1.271 13 C -0.145 4.145 14 C 0.043 3.957 15 N -0.536 5.536 16 C 0.017 3.983 17 C 0.085 3.915 18 H 0.041 0.959 19 H 0.084 0.916 20 H 0.059 0.941 21 H 0.020 0.980 22 H 0.032 0.968 23 H 0.259 0.741 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.042 0.958 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.026 0.974 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -0.780 6.168 6.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.002 4.002 3 O -0.310 6.310 4 C 0.189 3.811 5 C -0.607 4.607 6 H 0.070 0.930 7 C -0.165 4.165 8 N -0.516 5.516 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.196 1.196 13 C -0.183 4.183 14 C -0.085 4.085 15 N -0.260 5.260 16 C -0.132 4.132 17 C -0.043 4.043 18 H 0.061 0.939 19 H 0.103 0.897 20 H 0.078 0.922 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.822 -0.354 6.265 6.328 hybrid contribution 1.421 -0.673 -1.497 2.171 sum 2.243 -1.027 4.768 5.368 Atomic orbital electron populations 1.21669 0.93790 1.02233 1.01616 1.21983 0.94590 0.85695 0.97961 1.87809 1.23522 1.25262 1.94383 1.19703 0.79107 0.91605 0.90658 1.21715 1.28421 1.18640 0.91944 0.92978 1.25674 0.94815 0.95235 1.00772 1.70222 1.30131 1.31607 1.19645 0.85889 0.79437 0.79051 0.78907 1.19723 1.20995 1.19648 1.22942 0.99883 0.97689 0.97764 1.23008 0.96224 0.89877 0.99375 1.65404 1.45045 1.04233 1.11354 1.22517 0.94691 0.93330 1.02662 1.22610 0.97657 0.96985 0.87050 0.93947 0.89688 0.92229 0.96210 0.94969 0.93175 0.91900 0.91922 0.88941 0.93964 0.95821 0.91685 0.89444 0.95625 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 10.28 71.98 0.74 -4.26 16 2 C 0.07 3.39 6.01 71.98 0.43 3.82 16 3 O -0.39 -20.60 9.27 -148.98 -1.38 -21.98 16 4 C 0.23 11.55 0.63 -10.64 -0.01 11.54 16 5 C -0.57 -30.81 6.63 25.60 0.17 -30.64 16 6 H 0.05 2.79 7.37 -2.91 -0.02 2.77 16 7 C 0.04 2.13 5.25 84.65 0.44 2.57 16 8 N -0.88 -50.62 12.13 21.45 0.26 -50.36 16 9 Si 0.94 42.91 29.54 68.60 2.03 44.94 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 C -0.14 -6.12 5.81 31.49 0.18 -5.94 16 14 C 0.04 1.58 6.49 86.45 0.56 2.14 16 15 N -0.54 -22.00 5.66 -907.61 -5.14 -27.13 16 16 C 0.02 0.54 9.53 127.69 1.22 1.76 16 17 C 0.08 4.20 4.97 86.45 0.43 4.63 16 18 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 19 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 20 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.02 0.99 7.27 -2.39 -0.02 0.97 16 22 H 0.03 1.35 6.62 -2.39 -0.02 1.33 16 23 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 24 H 0.06 2.56 6.83 -2.39 -0.02 2.54 16 25 H 0.06 2.59 7.43 -2.38 -0.02 2.57 16 26 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 27 H 0.04 1.48 7.97 -2.39 -0.02 1.46 16 28 H 0.02 0.75 7.97 -2.39 -0.02 0.73 16 29 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.03 1.32 7.62 -2.39 -0.02 1.30 16 32 H 0.05 2.79 8.02 -2.39 -0.02 2.77 16 Total: -1.00 -61.41 257.80 1.01 -60.40 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 1.07 Total: 8.51 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.17 Total: -14.37 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -4.88 Total: -77.49 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.38 Total: -21.98 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -61.41 1.01 -60.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256149.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.344 kcal (2) G-P(sol) polarization free energy of solvation -61.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds