Wall clock time and date at job start Mon Mar 30 2020 02:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34371 * 125.78546 * 2 1 4 4 C 1.34303 * 109.47727 * 180.25010 * 3 2 1 5 5 Cl 1.73594 * 125.79825 * 179.71938 * 4 3 2 6 6 C 1.34649 * 108.40051 * 359.75883 * 4 3 2 7 7 C 1.34490 * 125.77335 * 179.82751 * 2 1 3 8 8 C 1.50700 * 126.57667 * 0.02562 * 7 2 1 9 9 C 1.50702 * 109.46869 * 84.71221 * 8 7 2 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 H 1.09001 * 109.47112 * 270.17548 * 1 2 3 18 18 H 1.09009 * 109.46834 * 30.17129 * 1 2 3 19 19 H 1.08996 * 109.47619 * 150.17401 * 1 2 3 20 20 H 1.07993 * 126.58746 * 179.97438 * 6 4 3 21 21 H 1.09004 * 109.47210 * 324.71514 * 8 7 2 22 22 H 1.08994 * 109.47551 * 204.71167 * 8 7 2 23 23 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2927 1.0900 0.0000 4 6 3.5817 0.7129 -0.0055 5 17 4.9516 1.7791 -0.0146 6 6 3.6309 -0.6327 -0.0038 7 6 2.2932 -1.0912 0.0033 8 6 1.8363 -2.5272 0.0071 9 6 1.5597 -2.9700 -1.4066 10 1 1.7011 -2.2807 -2.2259 11 6 1.1322 -4.2572 -1.6547 12 7 0.9603 -5.0968 -0.6571 13 14 0.7967 -4.8084 -3.4077 14 1 1.0646 -3.6840 -4.3400 15 1 1.6820 -5.9521 -3.7449 16 1 -0.6225 -5.2276 -3.5319 17 1 -0.3633 0.0031 1.0277 18 1 -0.3633 0.8885 -0.5165 19 1 -0.3634 -0.8915 -0.5111 20 1 4.5209 -1.2443 -0.0074 21 1 0.9265 -2.6175 0.6006 22 1 2.6155 -3.1553 0.4387 23 1 0.6592 -6.0022 -0.8316 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257921.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:40 Heat of formation + Delta-G solvation = -21.102783 kcal Electronic energy + Delta-G solvation = -10488.846301 eV Core-core repulsion = 8328.761560 eV Total energy + Delta-G solvation = -2160.084741 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -43.55389 -37.98036 -36.09555 -34.17189 -32.58877 -30.10058 -27.08100 -25.06207 -22.44975 -20.69075 -18.55814 -18.13134 -17.29191 -16.45807 -15.74406 -14.75890 -14.40531 -14.03742 -13.93545 -13.76816 -13.21639 -12.98696 -12.87087 -12.64851 -12.55524 -12.05623 -11.76279 -11.64822 -10.58198 -10.45252 -9.12458 -8.17902 -6.30029 0.19080 0.59751 1.41256 1.42199 1.54430 1.65926 2.43654 2.54275 3.13450 3.98629 4.05867 4.56939 4.58409 4.75762 4.86700 4.95057 5.23671 5.31488 5.50689 5.64021 5.76650 6.11927 6.21592 6.81626 7.38469 8.91615 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.048821 B = 0.008891 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.390015 B = 3148.569028 C = 3345.913622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.017 4.017 3 O -0.179 6.179 4 C 0.003 3.997 5 Cl 0.037 6.963 6 C -0.175 4.175 7 C -0.159 4.159 8 C 0.090 3.910 9 C -0.524 4.524 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.962 3.038 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.274 1.274 17 H 0.094 0.906 18 H 0.094 0.906 19 H 0.085 0.915 20 H 0.160 0.840 21 H 0.016 0.984 22 H 0.003 0.997 23 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 10.843 0.642 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 O -0.079 6.079 4 C -0.073 4.073 5 Cl 0.065 6.935 6 C -0.196 4.196 7 C -0.161 4.161 8 C 0.053 3.947 9 C -0.562 4.562 10 H 0.070 0.930 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.787 3.213 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.200 1.200 17 H 0.113 0.887 18 H 0.112 0.888 19 H 0.103 0.897 20 H 0.177 0.823 21 H 0.034 0.966 22 H 0.021 0.979 23 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.499 11.064 0.682 11.363 hybrid contribution 0.302 -0.619 -0.668 0.959 sum 2.801 10.446 0.014 10.814 Atomic orbital electron populations 1.20378 0.82506 1.04614 1.04395 1.22717 0.94873 0.82149 1.06921 1.83820 1.15076 1.35733 1.73235 1.22273 0.81482 0.89972 1.13558 1.98378 1.32022 1.65748 1.97305 1.21607 0.98994 0.92066 1.06885 1.20810 0.92553 0.97827 1.04877 1.17467 0.95147 0.85747 0.96386 1.21364 1.44849 0.97113 0.92891 0.93030 1.25846 0.95181 0.96634 1.01357 1.70074 1.47472 1.06339 1.32908 0.85445 0.78050 0.78207 0.79641 1.19160 1.20511 1.19958 0.88721 0.88770 0.89665 0.82270 0.96602 0.97851 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.98 10.12 71.24 0.72 -1.26 14 2 C -0.02 -0.68 7.32 24.83 0.18 -0.50 14 3 O -0.18 -6.68 10.65 -3.15 -0.03 -6.71 14 4 C 0.00 0.09 7.93 67.00 0.53 0.62 14 5 Cl 0.04 1.01 29.30 -2.72 -0.08 0.93 14 6 C -0.18 -6.98 10.84 22.23 0.24 -6.74 14 7 C -0.16 -7.13 5.35 -19.94 -0.11 -7.24 14 8 C 0.09 4.70 5.02 29.10 0.15 4.85 14 9 C -0.52 -29.28 9.09 25.60 0.23 -29.04 14 10 H 0.05 2.87 7.74 -2.91 -0.02 2.85 14 11 C 0.01 0.46 5.46 84.66 0.46 0.92 14 12 N -0.93 -54.53 13.29 21.45 0.28 -54.25 14 13 Si 0.96 43.45 29.54 68.60 2.03 45.48 14 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 14 15 H -0.28 -12.38 7.11 99.48 0.71 -11.67 14 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 14 17 H 0.09 2.57 8.14 -2.39 -0.02 2.55 14 18 H 0.09 2.41 8.14 -2.38 -0.02 2.39 14 19 H 0.08 3.03 7.87 -2.39 -0.02 3.01 14 20 H 0.16 5.86 8.06 -2.91 -0.02 5.84 14 21 H 0.02 0.86 8.03 -2.38 -0.02 0.84 14 22 H 0.00 0.18 8.14 -2.39 -0.02 0.16 14 23 H 0.27 14.61 8.31 -92.70 -0.77 13.84 14 Total: -1.00 -61.22 229.67 5.82 -55.40 By element: Atomic # 1 Polarization: -3.67 SS G_CDS: 1.21 Total: -2.46 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 2.41 Total: -38.39 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.28 Total: -54.25 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.03 Total: -6.71 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: 1.01 SS G_CDS: -0.08 Total: 0.93 kcal Total: -61.22 5.82 -55.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257921.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.299 kcal (2) G-P(sol) polarization free energy of solvation -61.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds