Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00011 * 2 1 4 4 C 1.53002 * 109.46776 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.45636 * 304.97290 * 4 3 2 6 6 C 1.53036 * 109.45869 * 184.99773 * 4 3 2 7 7 C 1.53119 * 109.28030 * 180.80459 * 6 4 3 8 8 H 1.09007 * 109.52327 * 297.69309 * 7 6 4 9 9 C 1.50698 * 109.52595 * 177.55902 * 7 6 4 10 10 H 1.08002 * 120.00143 * 354.44704 * 9 7 6 11 11 C 1.37876 * 119.99722 * 174.44278 * 9 7 6 12 12 N 1.31522 * 119.99849 * 162.12189 * 11 9 7 13 13 Si 1.86801 * 120.00333 * 342.12347 * 11 9 7 14 14 H 1.48503 * 109.47091 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47093 * 299.99863 * 13 11 9 16 16 H 1.48500 * 109.46865 * 59.99976 * 13 11 9 17 17 C 1.53123 * 109.15816 * 57.65405 * 7 6 4 18 18 C 1.53035 * 109.27906 * 302.34860 * 17 7 6 19 19 N 1.46846 * 109.46185 * 64.95181 * 4 3 2 20 20 H 1.08994 * 109.47696 * 180.02562 * 1 2 3 21 21 H 1.09010 * 109.47009 * 300.00415 * 1 2 3 22 22 H 1.08998 * 109.47521 * 59.99603 * 1 2 3 23 23 H 1.09003 * 109.47301 * 59.99751 * 3 2 1 24 24 H 1.09001 * 109.46856 * 300.00364 * 3 2 1 25 25 H 1.09006 * 109.50357 * 60.86430 * 6 4 3 26 26 H 1.09001 * 109.50538 * 300.74949 * 6 4 3 27 27 H 0.96999 * 119.99410 * 354.66851 * 12 11 9 28 28 H 1.09001 * 109.50019 * 62.29104 * 17 7 6 29 29 H 1.09001 * 109.50311 * 182.40446 * 17 7 6 30 30 H 1.09003 * 109.46605 * 299.16119 * 18 17 7 31 31 H 1.08997 * 109.45325 * 179.18860 * 18 17 7 32 32 H 1.00907 * 110.99370 * 305.84877 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8512 0.5685 0.8413 6 6 4.1573 2.5772 0.1251 7 6 5.6834 2.4533 0.1038 8 1 6.0131 1.8657 0.9606 9 6 6.3011 3.8264 0.1669 10 1 5.6725 4.7038 0.1267 11 6 7.6688 3.9626 0.2761 12 7 8.2409 5.1099 -0.0175 13 14 8.7093 2.5177 0.8410 14 1 10.1385 2.9197 0.8736 15 1 8.2807 2.1005 2.2002 16 1 8.5358 1.3841 -0.1025 17 6 6.1131 1.7580 -1.1910 18 6 5.4345 0.3891 -1.2786 19 7 3.9764 0.5618 -1.2553 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8423 3.0331 1.0638 26 1 3.8310 3.1982 -0.7092 27 1 7.7120 5.8357 -0.3841 28 1 5.8175 2.3661 -2.0460 29 1 7.1953 1.6284 -1.1926 30 1 5.7413 -0.2234 -0.4307 31 1 5.7272 -0.1025 -2.2063 32 1 3.5056 -0.3177 -1.4073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -61.043351 kcal Electronic energy + Delta-G solvation = -13230.705593 eV Core-core repulsion = 10997.564586 eV Total energy + Delta-G solvation = -2233.141007 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.62618 -37.04066 -33.28288 -31.21112 -30.86360 -27.12490 -25.53858 -24.46101 -21.68194 -20.57901 -18.74102 -17.41116 -16.20730 -16.02901 -15.78267 -14.61470 -14.10255 -13.73000 -13.27092 -13.07543 -12.57076 -11.99452 -11.95644 -11.73090 -11.42702 -11.12043 -10.57923 -10.43399 -10.13303 -9.81299 -9.62359 -9.55962 -9.26759 -8.68573 -8.22321 -7.92746 -6.38166 -4.00427 3.41519 3.46119 3.64627 3.85762 4.54899 4.62312 5.17501 5.28993 5.29023 5.44871 5.52714 5.58085 5.60870 5.78651 5.98065 5.98704 6.09005 6.29754 6.42390 6.49853 6.77377 6.89745 7.09184 7.21780 7.30283 7.59082 7.63963 7.93365 8.22613 8.43307 8.95480 9.66533 10.98756 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059294 B = 0.008960 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.109887 B = 3124.128017 C = 3317.295503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.066 3.934 4 C 0.090 3.910 5 H 0.038 0.962 6 C -0.089 4.089 7 C 0.022 3.978 8 H 0.016 0.984 9 C -0.595 4.595 10 H 0.055 0.945 11 C 0.032 3.968 12 N -0.909 5.909 13 Si 1.041 2.959 14 H -0.287 1.287 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.120 4.120 18 C 0.057 3.943 19 N -0.681 5.681 20 H 0.081 0.919 21 H 0.037 0.963 22 H 0.039 0.961 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.267 0.733 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 -9.944 -0.381 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.011 4.011 4 C -0.020 4.020 5 H 0.056 0.944 6 C -0.127 4.127 7 C 0.003 3.997 8 H 0.034 0.966 9 C -0.633 4.633 10 H 0.073 0.927 11 C -0.173 4.173 12 N -0.543 5.543 13 Si 0.870 3.130 14 H -0.213 1.213 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.158 4.158 18 C -0.073 4.073 19 N -0.313 5.313 20 H 0.099 0.901 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.426 -9.938 -0.335 13.701 hybrid contribution -1.756 -0.018 0.230 1.771 sum -11.181 -9.956 -0.105 14.972 Atomic orbital electron populations 1.22675 0.81560 1.02237 0.99803 1.87826 1.19325 1.28945 1.95420 1.22764 0.93899 0.84019 1.00374 1.21616 0.91262 0.98069 0.91039 0.94391 1.21507 0.97881 0.92588 1.00753 1.18989 0.91169 0.96999 0.92572 0.96605 1.21989 0.93886 0.91443 1.55987 0.92698 1.25737 0.95939 1.01475 0.94146 1.70838 1.38935 1.04887 1.39633 0.84113 0.76128 0.75692 0.77042 1.21329 1.21206 1.20003 1.22125 0.99179 0.93378 1.01163 1.22049 0.87339 0.98843 0.99020 1.60313 1.06427 1.29370 1.35170 0.90052 0.94391 0.94195 0.93070 0.92467 0.92724 0.92057 0.92301 0.92083 0.92005 0.96186 0.92039 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.40 -5.73 10.19 -35.23 -0.36 -6.09 16 3 C 0.07 1.00 5.55 37.16 0.21 1.20 16 4 C 0.09 1.61 2.74 -67.72 -0.19 1.43 16 5 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 6 C -0.09 -1.86 4.60 -26.65 -0.12 -1.98 16 7 C 0.02 0.53 1.74 -91.65 -0.16 0.37 16 8 H 0.02 0.39 6.79 -51.93 -0.35 0.04 16 9 C -0.60 -16.93 8.82 -34.44 -0.30 -17.23 16 10 H 0.05 1.68 7.99 -52.49 -0.42 1.26 16 11 C 0.03 0.92 5.34 -17.82 -0.10 0.83 16 12 N -0.91 -28.23 13.70 55.43 0.76 -27.47 16 13 Si 1.04 25.54 26.41 -169.99 -4.49 21.05 16 14 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.18 5.57 56.52 0.32 -5.86 16 17 C -0.12 -2.70 5.06 -26.65 -0.13 -2.83 16 18 C 0.06 1.05 6.55 -3.83 -0.03 1.03 16 19 N -0.68 -12.08 6.50 -106.76 -0.69 -12.77 16 20 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 22 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 28 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.06 1.43 4.87 -51.93 -0.25 1.18 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.34 5.36 8.33 -39.29 -0.33 5.04 16 LS Contribution 254.28 15.07 3.83 3.83 Total: -1.00 -30.42 254.28 -5.90 -36.32 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.24 Total: 0.86 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 0.29 Total: -15.73 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.06 Total: -40.24 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.36 Total: -6.09 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -4.49 Total: 21.05 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.42 -5.90 -36.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.725 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds