Wall clock time and date at job start Mon Mar 30 2020 02:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00011 * 2 1 4 4 C 1.53002 * 109.46776 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.45636 * 304.97290 * 4 3 2 6 6 C 1.53036 * 109.45869 * 184.99773 * 4 3 2 7 7 C 1.53119 * 109.28030 * 180.80459 * 6 4 3 8 8 H 1.09007 * 109.52327 * 297.69309 * 7 6 4 9 9 C 1.50698 * 109.52595 * 177.55902 * 7 6 4 10 10 H 1.08002 * 120.00143 * 354.44704 * 9 7 6 11 11 C 1.37876 * 119.99722 * 174.44278 * 9 7 6 12 12 N 1.31522 * 119.99849 * 162.12189 * 11 9 7 13 13 Si 1.86801 * 120.00333 * 342.12347 * 11 9 7 14 14 H 1.48503 * 109.47091 * 179.97438 * 13 11 9 15 15 H 1.48498 * 109.47093 * 299.99863 * 13 11 9 16 16 H 1.48500 * 109.46865 * 59.99976 * 13 11 9 17 17 C 1.53123 * 109.15816 * 57.65405 * 7 6 4 18 18 C 1.53035 * 109.27906 * 302.34860 * 17 7 6 19 19 N 1.46846 * 109.46185 * 64.95181 * 4 3 2 20 20 H 1.08994 * 109.47696 * 180.02562 * 1 2 3 21 21 H 1.09010 * 109.47009 * 300.00415 * 1 2 3 22 22 H 1.08998 * 109.47521 * 59.99603 * 1 2 3 23 23 H 1.09003 * 109.47301 * 59.99751 * 3 2 1 24 24 H 1.09001 * 109.46856 * 300.00364 * 3 2 1 25 25 H 1.09006 * 109.50357 * 60.86430 * 6 4 3 26 26 H 1.09001 * 109.50538 * 300.74949 * 6 4 3 27 27 H 0.96999 * 119.99410 * 354.66851 * 12 11 9 28 28 H 1.09001 * 109.50019 * 62.29104 * 17 7 6 29 29 H 1.09001 * 109.50311 * 182.40446 * 17 7 6 30 30 H 1.09003 * 109.46605 * 299.16119 * 18 17 7 31 31 H 1.08997 * 109.45325 * 179.18860 * 18 17 7 32 32 H 1.00907 * 110.99370 * 305.84877 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8512 0.5685 0.8413 6 6 4.1573 2.5772 0.1251 7 6 5.6834 2.4533 0.1038 8 1 6.0131 1.8657 0.9606 9 6 6.3011 3.8264 0.1669 10 1 5.6725 4.7038 0.1267 11 6 7.6688 3.9626 0.2761 12 7 8.2409 5.1099 -0.0175 13 14 8.7093 2.5177 0.8410 14 1 10.1385 2.9197 0.8736 15 1 8.2807 2.1005 2.2002 16 1 8.5358 1.3841 -0.1025 17 6 6.1131 1.7580 -1.1910 18 6 5.4345 0.3891 -1.2786 19 7 3.9764 0.5618 -1.2553 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8423 3.0331 1.0638 26 1 3.8310 3.1982 -0.7092 27 1 7.7120 5.8357 -0.3841 28 1 5.8175 2.3661 -2.0460 29 1 7.1953 1.6284 -1.1926 30 1 5.7413 -0.2234 -0.4307 31 1 5.7272 -0.1025 -2.2063 32 1 3.5056 -0.3177 -1.4073 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258335.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:51 Heat of formation + Delta-G solvation = -83.924086 kcal Electronic energy + Delta-G solvation = -13231.697776 eV Core-core repulsion = 10997.564586 eV Total energy + Delta-G solvation = -2234.133190 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.04409 -38.29841 -35.28559 -32.85444 -32.61368 -28.21595 -27.23446 -25.94513 -23.32348 -22.23883 -20.46080 -19.58893 -17.53919 -17.21539 -16.92284 -15.91058 -15.61989 -15.35698 -15.19728 -14.49714 -14.35599 -13.78225 -13.40294 -13.10674 -12.88000 -12.42054 -12.32802 -12.04996 -11.94563 -11.62074 -11.41799 -11.08552 -10.72236 -10.62053 -10.44224 -9.34944 -8.70797 -6.34330 1.45260 1.52066 1.72507 2.50681 2.80592 3.05354 3.24842 3.99088 4.15541 4.22650 4.30140 4.41415 4.49342 4.55364 4.59873 4.66784 4.68792 4.86166 4.86721 4.91806 4.95533 5.14071 5.33000 5.48455 5.73468 6.03294 6.11701 6.13864 6.21780 6.57241 6.64562 7.41729 8.64347 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059294 B = 0.008960 C = 0.008439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.109887 B = 3124.128017 C = 3317.295503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.075 3.925 4 C 0.096 3.904 5 H 0.038 0.962 6 C -0.085 4.085 7 C 0.017 3.983 8 H 0.020 0.980 9 C -0.601 4.601 10 H 0.015 0.985 11 C -0.020 4.020 12 N -0.941 5.941 13 Si 1.080 2.920 14 H -0.290 1.290 15 H -0.268 1.268 16 H -0.239 1.239 17 C -0.117 4.117 18 C 0.063 3.937 19 N -0.684 5.684 20 H 0.101 0.899 21 H 0.048 0.952 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.251 0.749 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.030 0.970 31 H 0.087 0.913 32 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 -12.712 -0.209 17.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.002 4.002 4 C -0.015 4.015 5 H 0.055 0.945 6 C -0.123 4.123 7 C -0.003 4.003 8 H 0.038 0.962 9 C -0.639 4.639 10 H 0.034 0.966 11 C -0.217 4.217 12 N -0.577 5.577 13 Si 0.902 3.098 14 H -0.217 1.217 15 H -0.193 1.193 16 H -0.164 1.164 17 C -0.155 4.155 18 C -0.066 4.066 19 N -0.317 5.317 20 H 0.119 0.881 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.105 0.895 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.434 -12.721 -0.174 16.453 hybrid contribution -1.560 0.926 0.165 1.822 sum -11.994 -11.794 -0.008 16.821 Atomic orbital electron populations 1.22918 0.79394 1.03881 1.00708 1.87780 1.21599 1.28132 1.95580 1.22537 0.91964 0.84734 1.00951 1.21441 0.93168 0.95666 0.91175 0.94452 1.21369 0.95990 0.94774 1.00179 1.19000 0.93179 0.94381 0.93699 0.96232 1.22253 0.93871 0.92651 1.55088 0.96633 1.27206 0.97798 1.03107 0.93614 1.70967 1.39023 1.05663 1.42077 0.83647 0.74257 0.73687 0.78251 1.21675 1.19304 1.16387 1.21969 0.99114 0.95404 0.99044 1.21948 0.87564 0.96294 1.00828 1.60241 1.06067 1.30390 1.35007 0.88108 0.93373 0.93412 0.92020 0.92468 0.92731 0.93578 0.93993 0.94048 0.92761 0.95189 0.89501 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.41 -10.61 10.19 -148.98 -1.52 -12.13 16 3 C 0.07 2.08 5.55 71.98 0.40 2.48 16 4 C 0.10 3.21 2.74 44.94 0.12 3.33 16 5 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 6 C -0.08 -3.50 4.60 30.65 0.14 -3.36 16 7 C 0.02 0.79 1.74 -11.46 -0.02 0.77 16 8 H 0.02 0.93 6.79 -2.38 -0.02 0.91 16 9 C -0.60 -35.02 8.82 25.60 0.23 -34.80 16 10 H 0.02 0.99 7.99 -2.91 -0.02 0.96 16 11 C -0.02 -1.17 5.34 84.65 0.45 -0.71 16 12 N -0.94 -60.28 13.70 21.45 0.29 -59.98 16 13 Si 1.08 50.59 26.41 68.60 1.81 52.40 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 16 H -0.24 -9.87 5.57 99.48 0.55 -9.32 16 17 C -0.12 -5.08 5.06 30.65 0.16 -4.93 16 18 C 0.06 2.14 6.55 86.32 0.57 2.70 16 19 N -0.68 -22.26 6.50 -491.69 -3.20 -25.46 16 20 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 22 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 2.19 8.14 -2.38 -0.02 2.18 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.05 2.40 4.87 -2.39 -0.01 2.39 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.35 9.93 8.33 -89.69 -0.75 9.19 16 Total: -1.00 -66.35 254.28 0.83 -65.52 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.15 Total: 12.43 kcal Atomic # 6 Polarization: -36.08 SS G_CDS: 3.29 Total: -32.79 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.90 Total: -85.44 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.52 Total: -12.13 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.81 Total: 52.40 kcal Total: -66.35 0.83 -65.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258335.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.405 kcal (2) G-P(sol) polarization free energy of solvation -66.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds