Wall clock time and date at job start Mon Mar 30 2020 02:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00181 * 2 1 4 4 C 1.52999 * 109.47345 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.45414 * 54.97419 * 4 3 2 6 6 C 1.53035 * 109.46106 * 174.94893 * 4 3 2 7 7 C 1.53120 * 109.27920 * 179.19523 * 6 4 3 8 8 H 1.08998 * 109.57281 * 62.27925 * 7 6 4 9 9 C 1.50694 * 109.52388 * 182.44037 * 7 6 4 10 10 H 1.07999 * 120.00563 * 5.35721 * 9 7 6 11 11 C 1.37876 * 119.99937 * 185.35783 * 9 7 6 12 12 N 1.31522 * 120.00240 * 198.10634 * 11 9 7 13 13 Si 1.86804 * 120.00047 * 18.10502 * 11 9 7 14 14 H 1.48505 * 109.46893 * 180.02562 * 13 11 9 15 15 H 1.48494 * 109.47034 * 299.99755 * 13 11 9 16 16 H 1.48498 * 109.47228 * 60.00303 * 13 11 9 17 17 C 1.53117 * 109.15963 * 302.34483 * 7 6 4 18 18 C 1.53038 * 109.27926 * 57.65150 * 17 7 6 19 19 N 1.46842 * 109.52367 * 300.82124 * 18 17 7 20 20 H 1.09000 * 109.47350 * 299.99641 * 1 2 3 21 21 H 1.09002 * 109.47209 * 60.00475 * 1 2 3 22 22 H 1.09008 * 109.47099 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46882 * 59.99628 * 3 2 1 24 24 H 1.08998 * 109.46985 * 300.00379 * 3 2 1 25 25 H 1.09005 * 109.50659 * 59.25302 * 6 4 3 26 26 H 1.09001 * 109.50729 * 299.13897 * 6 4 3 27 27 H 0.97004 * 119.99599 * 354.61570 * 12 11 9 28 28 H 1.09000 * 109.50598 * 177.59356 * 17 7 6 29 29 H 1.09002 * 109.50618 * 297.71415 * 17 7 6 30 30 H 1.09001 * 109.45919 * 60.83573 * 18 17 7 31 31 H 1.08999 * 109.46294 * 180.81663 * 18 17 7 32 32 H 1.00905 * 111.00166 * 185.83685 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8511 0.5678 -0.8407 6 6 4.1572 2.5772 -0.1264 7 6 5.6832 2.4533 -0.1051 8 1 6.0138 1.8646 -0.9608 9 6 6.3009 3.8263 -0.1696 10 1 5.6722 4.7037 -0.1334 11 6 7.6689 3.9626 -0.2749 12 7 8.2404 5.1093 0.0221 13 14 8.7107 2.5184 -0.8392 14 1 10.1401 2.9203 -0.8674 15 1 8.5347 1.3834 0.1019 16 1 8.2858 2.1035 -2.2003 17 6 6.1131 1.7592 1.1903 18 6 5.4345 0.3904 1.2792 19 7 3.9765 0.5630 1.2558 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.6885 1.8464 0.8900 24 1 1.6885 1.8464 -0.8899 25 1 3.8309 3.1989 0.7074 26 1 3.8421 3.0322 -1.0654 27 1 7.6946 5.8812 0.2395 28 1 7.1953 1.6296 1.1919 29 1 5.8175 2.3680 2.0448 30 1 5.7413 -0.2228 0.4318 31 1 5.7271 -0.1004 2.2074 32 1 3.5057 -0.3164 1.4087 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261258337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:52 Heat of formation + Delta-G solvation = -60.989549 kcal Electronic energy + Delta-G solvation = -13230.227225 eV Core-core repulsion = 10997.088551 eV Total energy + Delta-G solvation = -2233.138674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.62429 -37.03919 -33.27461 -31.20787 -30.85693 -27.12315 -25.53368 -24.45864 -21.67532 -20.57595 -18.73909 -17.41057 -16.20631 -16.02663 -15.78145 -14.61264 -14.09993 -13.73094 -13.27011 -13.07295 -12.55544 -11.99267 -11.96214 -11.72957 -11.44037 -11.11845 -10.54755 -10.42466 -10.13262 -9.81533 -9.62706 -9.56277 -9.29345 -8.72020 -8.14055 -7.92112 -6.39557 -3.99905 3.40746 3.45426 3.63830 3.85858 4.53026 4.62607 5.17575 5.29126 5.30608 5.44988 5.52875 5.58108 5.61035 5.78970 5.98467 5.99157 6.09327 6.30386 6.42542 6.50398 6.77644 6.90223 7.10037 7.21964 7.30910 7.59560 7.64369 7.93813 8.23371 8.42940 8.96461 9.67934 10.99648 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059302 B = 0.008960 C = 0.008436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.046074 B = 3124.151252 C = 3318.306405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.066 3.934 4 C 0.090 3.910 5 H 0.038 0.962 6 C -0.089 4.089 7 C 0.023 3.977 8 H 0.015 0.985 9 C -0.596 4.596 10 H 0.054 0.946 11 C 0.029 3.971 12 N -0.910 5.910 13 Si 1.047 2.953 14 H -0.287 1.287 15 H -0.274 1.274 16 H -0.285 1.285 17 C -0.120 4.120 18 C 0.056 3.944 19 N -0.681 5.681 20 H 0.039 0.961 21 H 0.037 0.963 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.266 0.734 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 -9.937 0.170 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.011 4.011 4 C -0.020 4.020 5 H 0.056 0.944 6 C -0.127 4.127 7 C 0.003 3.997 8 H 0.033 0.967 9 C -0.634 4.634 10 H 0.072 0.928 11 C -0.176 4.176 12 N -0.544 5.544 13 Si 0.876 3.124 14 H -0.213 1.213 15 H -0.200 1.200 16 H -0.212 1.212 17 C -0.158 4.158 18 C -0.073 4.073 19 N -0.313 5.313 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.387 -9.973 0.263 13.699 hybrid contribution -1.781 0.041 -0.384 1.822 sum -11.168 -9.932 -0.122 14.946 Atomic orbital electron populations 1.22675 0.81562 1.02237 0.99801 1.87824 1.19324 1.28948 1.95420 1.22764 0.93904 0.84018 1.00373 1.21615 0.91257 0.98072 0.91036 0.94400 1.21506 0.97886 0.92594 1.00741 1.18978 0.91151 0.96966 0.92567 0.96695 1.21974 0.94052 0.91436 1.55911 0.92789 1.25764 0.96073 1.02239 0.93501 1.70863 1.38687 1.02574 1.42302 0.84011 0.75955 0.75411 0.76990 1.21323 1.20013 1.21193 1.22118 0.99191 0.93337 1.01150 1.22053 0.87330 0.98865 0.99015 1.60310 1.06438 1.29420 1.35114 0.94193 0.94393 0.90054 0.92463 0.93076 0.92043 0.92747 0.92365 0.91982 0.92068 0.96199 0.92034 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.40 -5.73 10.19 -35.23 -0.36 -6.09 16 3 C 0.07 1.00 5.55 37.16 0.21 1.21 16 4 C 0.09 1.62 2.74 -67.72 -0.19 1.43 16 5 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 6 C -0.09 -1.86 4.60 -26.65 -0.12 -1.99 16 7 C 0.02 0.54 1.75 -91.65 -0.16 0.38 16 8 H 0.02 0.37 6.79 -51.93 -0.35 0.02 16 9 C -0.60 -16.97 8.82 -34.44 -0.30 -17.27 16 10 H 0.05 1.65 7.99 -52.49 -0.42 1.23 16 11 C 0.03 0.84 5.34 -17.82 -0.10 0.74 16 12 N -0.91 -28.29 13.70 55.43 0.76 -27.53 16 13 Si 1.05 25.62 26.42 -169.99 -4.49 21.13 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.27 -6.17 5.57 56.52 0.32 -5.85 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 C -0.12 -2.69 5.06 -26.65 -0.13 -2.83 16 18 C 0.06 1.05 6.55 -3.84 -0.03 1.03 16 19 N -0.68 -12.10 6.50 -106.77 -0.69 -12.79 16 20 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.27 8.25 8.73 -40.82 -0.36 7.90 16 28 H 0.06 1.44 4.86 -51.93 -0.25 1.19 16 29 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.34 5.37 8.33 -39.29 -0.33 5.04 16 LS Contribution 254.28 15.07 3.83 3.83 Total: -1.00 -30.48 254.28 -5.90 -36.39 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.24 Total: 0.90 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 0.29 Total: -15.83 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.06 Total: -40.33 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.36 Total: -6.09 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.49 Total: 21.13 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.48 -5.90 -36.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.603 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds