Wall clock time and date at job start Mon Mar 30 2020 02:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00018 * 2 1 4 4 C 1.53005 * 109.47490 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.46013 * 305.02261 * 4 3 2 6 6 C 1.53032 * 109.45593 * 185.04788 * 4 3 2 7 7 C 1.53122 * 109.27974 * 180.81003 * 6 4 3 8 8 H 1.08996 * 109.57442 * 177.58728 * 7 6 4 9 9 C 1.50697 * 109.51862 * 297.75162 * 7 6 4 10 10 H 1.08002 * 120.00599 * 359.68326 * 9 7 6 11 11 C 1.37880 * 119.99675 * 179.67859 * 9 7 6 12 12 N 1.31517 * 120.00210 * 179.97438 * 11 9 7 13 13 Si 1.86800 * 120.00019 * 0.02562 * 11 9 7 14 14 H 1.48503 * 109.46845 * 269.99914 * 13 11 9 15 15 H 1.48503 * 109.47399 * 29.99403 * 13 11 9 16 16 H 1.48498 * 109.47295 * 150.00010 * 13 11 9 17 17 C 1.53126 * 109.15610 * 57.65351 * 7 6 4 18 18 C 1.53031 * 109.27854 * 302.34480 * 17 7 6 19 19 N 1.46847 * 109.52436 * 59.18515 * 18 17 7 20 20 H 1.08998 * 109.47426 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47583 * 300.00550 * 1 2 3 22 22 H 1.09001 * 109.46858 * 60.00089 * 1 2 3 23 23 H 1.09001 * 109.47125 * 59.99438 * 3 2 1 24 24 H 1.08997 * 109.47155 * 299.99820 * 3 2 1 25 25 H 1.09005 * 109.50214 * 60.86680 * 6 4 3 26 26 H 1.09000 * 109.50401 * 300.75430 * 6 4 3 27 27 H 0.96998 * 119.99640 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.50226 * 62.28910 * 17 7 6 29 29 H 1.08999 * 109.49625 * 182.36427 * 17 7 6 30 30 H 1.09003 * 109.46281 * 179.19790 * 18 17 7 31 31 H 1.09004 * 109.46968 * 299.16546 * 18 17 7 32 32 H 1.00896 * 111.00495 * 62.35184 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8506 0.5683 0.8425 6 6 4.1570 2.5774 0.1276 7 6 5.6831 2.4538 0.1075 8 1 6.1305 3.4465 0.1545 9 6 6.1379 1.6396 1.2912 10 1 5.4124 1.2531 1.9917 11 6 7.4803 1.3879 1.4799 12 7 7.8774 0.6778 2.5132 13 14 8.7353 2.0569 0.2686 14 1 8.9557 1.0648 -0.8142 15 1 8.2310 3.3249 -0.3171 16 1 10.0167 2.3126 0.9741 17 6 6.1139 1.7591 -1.1874 18 6 5.4357 0.3902 -1.2761 19 7 3.9775 0.5625 -1.2539 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.6885 1.8464 0.8899 24 1 1.6886 1.8463 -0.8900 25 1 3.8411 3.0327 1.0663 26 1 3.8312 3.1987 -0.7066 27 1 8.8219 0.5011 2.6460 28 1 5.8189 2.3676 -2.0423 29 1 7.1963 1.6305 -1.1884 30 1 5.7292 -0.1011 -2.2039 31 1 5.7419 -0.2226 -0.4283 32 1 3.6641 1.0950 -2.0516 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261258340.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:53 Heat of formation + Delta-G solvation = -73.785523 kcal Electronic energy + Delta-G solvation = -13481.475755 eV Core-core repulsion = 11247.782205 eV Total energy + Delta-G solvation = -2233.693549 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.23111 -38.29372 -34.91486 -32.83103 -32.47409 -28.17375 -27.13304 -26.06807 -23.82330 -22.39421 -20.97211 -18.40167 -17.27929 -16.97670 -16.82443 -16.38324 -15.49014 -15.33934 -14.90159 -14.73430 -14.47776 -13.85493 -13.21686 -13.10593 -12.82007 -12.50836 -12.37899 -11.99847 -11.90944 -11.71018 -11.57000 -11.07978 -10.86660 -10.64560 -10.49195 -9.07979 -8.26714 -6.28384 1.29316 1.34213 1.44402 2.32968 2.95391 3.09675 3.42532 4.08600 4.12210 4.33188 4.37620 4.43825 4.53383 4.60206 4.61258 4.66315 4.68849 4.90481 4.91146 4.99692 5.03669 5.28329 5.34478 5.38914 5.55281 5.74874 6.19634 6.32964 6.42562 6.76523 6.78728 7.35503 8.90175 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054714 B = 0.010236 C = 0.009683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.627291 B = 2734.876204 C = 2890.868259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.077 3.923 4 C 0.099 3.901 5 H 0.050 0.950 6 C -0.120 4.120 7 C 0.004 3.996 8 H 0.024 0.976 9 C -0.500 4.500 10 H 0.032 0.968 11 C 0.009 3.991 12 N -0.952 5.952 13 Si 0.949 3.051 14 H -0.267 1.267 15 H -0.249 1.249 16 H -0.304 1.304 17 C -0.154 4.154 18 C 0.075 3.925 19 N -0.668 5.668 20 H 0.091 0.909 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.263 0.737 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.901 3.477 -9.604 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.001 3.999 4 C -0.012 4.012 5 H 0.068 0.932 6 C -0.159 4.159 7 C -0.015 4.015 8 H 0.042 0.958 9 C -0.538 4.538 10 H 0.050 0.950 11 C -0.187 4.187 12 N -0.593 5.593 13 Si 0.777 3.223 14 H -0.194 1.194 15 H -0.173 1.173 16 H -0.232 1.232 17 C -0.193 4.193 18 C -0.055 4.055 19 N -0.297 5.297 20 H 0.110 0.890 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.797 2.584 -9.301 14.483 hybrid contribution 1.184 1.088 0.145 1.614 sum -9.612 3.672 -9.157 13.774 Atomic orbital electron populations 1.22904 0.80091 1.03468 1.00659 1.87978 1.20884 1.28415 1.95461 1.22561 0.91981 0.84575 1.00830 1.21357 0.92706 0.93976 0.93118 0.93159 1.21938 0.95761 0.96693 1.01481 1.19220 0.94123 0.95345 0.92827 0.95800 1.21233 0.92124 1.31738 1.08707 0.95004 1.25858 1.00731 0.95129 0.96986 1.70064 1.16240 1.41703 1.31330 0.85837 0.77528 0.80222 0.78720 1.19370 1.17266 1.23174 1.22514 0.99226 0.98953 0.98636 1.21722 0.87167 0.95644 1.00931 1.60621 1.11321 1.53939 1.03832 0.89019 0.93620 0.92835 0.92558 0.91413 0.92608 0.90671 0.92844 0.91068 0.94543 0.90265 0.93757 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -13.17 10.65 -148.98 -1.59 -14.75 16 3 C 0.08 2.31 5.51 71.98 0.40 2.70 16 4 C 0.10 3.71 2.49 44.94 0.11 3.82 16 5 H 0.05 2.40 6.78 -2.39 -0.02 2.39 16 6 C -0.12 -4.42 4.82 30.65 0.15 -4.28 16 7 C 0.00 0.17 2.19 -11.46 -0.03 0.14 16 8 H 0.02 1.09 7.21 -2.39 -0.02 1.08 16 9 C -0.50 -28.17 7.32 25.60 0.19 -27.98 16 10 H 0.03 2.02 7.12 -2.91 -0.02 2.00 16 11 C 0.01 0.54 5.45 84.65 0.46 1.00 16 12 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 13 Si 0.95 45.43 24.39 68.60 1.67 47.10 16 14 H -0.27 -12.21 6.85 99.48 0.68 -11.53 16 15 H -0.25 -10.98 6.53 99.48 0.65 -10.33 16 16 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 17 C -0.15 -6.19 5.08 30.65 0.16 -6.03 16 18 C 0.08 2.97 6.35 86.32 0.55 3.52 16 19 N -0.67 -23.75 6.45 -491.68 -3.17 -26.92 16 20 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 25 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 28 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 1.57 3.25 -2.39 -0.01 1.56 16 30 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.04 2.15 7.31 -2.39 -0.02 2.13 16 32 H 0.34 9.99 8.79 -89.70 -0.79 9.20 16 Total: -1.00 -67.17 248.20 0.67 -66.50 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.22 Total: 13.54 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.23 Total: -25.32 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -2.87 Total: -87.06 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.59 Total: -14.75 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -67.17 0.67 -66.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261258340.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.288 kcal (2) G-P(sol) polarization free energy of solvation -67.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds