Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35446 * 117.00242 * 2 1 4 4 N 1.31448 * 127.49940 * 179.97438 * 3 2 1 5 5 C 1.31287 * 116.84283 * 179.97438 * 4 3 2 6 6 C 1.50696 * 121.07076 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47393 * 90.00025 * 6 5 4 8 8 H 1.08003 * 119.99475 * 359.97438 * 7 6 5 9 9 C 1.37868 * 119.99879 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00490 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99767 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47230 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47329 * 119.99840 * 11 9 7 14 14 H 1.48500 * 109.47356 * 240.00326 * 11 9 7 15 15 N 1.30137 * 117.85621 * 359.97438 * 5 4 3 16 16 S 1.69955 * 105.73497 * 0.02562 * 15 5 4 17 17 H 1.09002 * 109.47041 * 59.99640 * 1 2 3 18 18 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47305 * 299.99992 * 1 2 3 20 20 H 1.09003 * 109.47047 * 209.99640 * 6 5 4 21 21 H 1.08996 * 109.47529 * 329.99679 * 6 5 4 22 22 H 0.97000 * 120.00054 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 7 3.3364 1.4463 0.0005 5 6 3.7059 2.7061 -0.0002 6 6 5.1633 3.0891 0.0009 7 6 5.6506 3.2157 -1.4196 8 1 4.9726 3.0363 -2.2410 9 6 6.9616 3.5606 -1.6705 10 7 7.7870 3.7796 -0.6703 11 14 7.5657 3.7168 -3.4313 12 1 6.4496 3.4221 -4.3655 13 1 8.0549 5.0992 -3.6660 14 1 8.6724 2.7541 -3.6622 15 7 2.7729 3.6134 -0.0017 16 16 1.3020 2.7620 -0.0017 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 5.2880 4.0427 0.5140 21 1 5.7405 2.3212 0.5158 22 1 8.7093 4.0226 -0.8469 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261270673.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = 21.161230 kcal Electronic energy + Delta-G solvation = -10354.187336 eV Core-core repulsion = 8230.271758 eV Total energy + Delta-G solvation = -2123.915578 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.036 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.87476 -38.58615 -33.23514 -31.49625 -28.98193 -27.76983 -24.63813 -22.84378 -19.54647 -18.89244 -17.24099 -16.64093 -16.19325 -15.08952 -14.65436 -14.02103 -13.22268 -12.67288 -12.29114 -11.84040 -11.60486 -11.32825 -10.93241 -10.68384 -10.66797 -9.91385 -9.56090 -9.39475 -9.20162 -8.47770 -8.38091 -6.10387 -4.13568 1.00895 1.23208 2.06256 2.68252 3.28498 3.30415 3.37966 3.44573 4.42398 4.78073 4.85005 5.01813 5.21822 5.27938 6.07289 6.44067 6.70560 7.32091 7.37320 7.83667 8.13457 8.31416 8.86103 9.48979 11.00575 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.061693 B = 0.008613 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.754979 B = 3250.225379 C = 3346.026271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.262 6.262 3 C 0.272 3.728 4 N -0.514 5.514 5 C 0.338 3.662 6 C 0.097 3.903 7 C -0.510 4.510 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.903 3.097 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.281 1.281 15 N -0.464 5.464 16 S 0.098 5.902 17 H 0.067 0.933 18 H 0.118 0.882 19 H 0.067 0.933 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.703 -5.350 1.409 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.166 6.166 3 C -0.055 4.055 4 N -0.250 5.250 5 C 0.052 3.948 6 C 0.055 3.945 7 C -0.550 4.550 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.529 5.529 11 Si 0.731 3.269 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.207 1.207 15 N -0.295 5.295 16 S 0.231 5.769 17 H 0.086 0.914 18 H 0.136 0.864 19 H 0.086 0.914 20 H 0.072 0.928 21 H 0.074 0.926 22 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.052 -4.482 1.462 14.822 hybrid contribution 0.740 -0.567 -0.962 1.339 sum -13.312 -5.049 0.500 14.246 Atomic orbital electron populations 1.23497 0.75648 1.05505 1.02823 1.85864 1.22238 1.21061 1.87438 1.26979 0.92341 0.90926 0.95224 1.67227 1.11033 1.21608 1.25085 1.24560 1.00960 0.80782 0.88526 1.18236 0.78036 0.98625 0.99579 1.20839 0.95707 1.48017 0.90428 0.92427 1.24930 0.96371 0.94920 0.97773 1.69948 1.05454 1.46813 1.30728 0.86349 0.78755 0.77757 0.84072 1.19727 1.20766 1.20725 1.77968 0.95184 1.23930 1.32465 1.84829 1.21901 0.97960 1.72212 0.91420 0.86389 0.91440 0.92838 0.92568 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.36 101.05 1.05 1.23 14 2 O -0.26 -3.92 10.55 -18.03 -0.19 -4.11 14 3 C 0.27 5.04 8.62 52.60 0.45 5.49 14 4 N -0.51 -11.78 10.60 -15.35 -0.16 -11.94 14 5 C 0.34 8.20 6.75 -159.03 -1.07 7.12 14 6 C 0.10 2.62 5.51 -29.03 -0.16 2.46 14 7 C -0.51 -14.73 9.09 -34.44 -0.31 -15.04 14 8 H 0.06 1.68 7.74 -52.48 -0.41 1.27 14 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 14 10 N -0.89 -26.22 13.29 55.43 0.74 -25.49 14 11 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 14 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 14 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 14 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 14 15 N -0.46 -10.58 12.15 29.51 0.36 -10.22 14 16 S 0.10 1.71 22.84 -107.50 -2.45 -0.75 14 17 H 0.07 0.52 8.11 -51.93 -0.42 0.10 14 18 H 0.12 0.65 8.14 -51.93 -0.42 0.22 14 19 H 0.07 0.50 8.11 -51.93 -0.42 0.08 14 20 H 0.05 1.48 8.14 -51.93 -0.42 1.06 14 21 H 0.06 1.56 8.14 -51.93 -0.42 1.14 14 22 H 0.26 7.28 8.31 -40.82 -0.34 6.94 14 LS Contribution 222.78 15.07 3.36 3.36 Total: -1.00 -32.09 222.78 -5.17 -37.27 By element: Atomic # 1 Polarization: -6.23 SS G_CDS: -1.65 Total: -7.88 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.14 Total: 2.95 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.93 Total: -47.65 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.19 Total: -4.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.45 Total: -0.75 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -32.09 -5.17 -37.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270673.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.427 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds