Wall clock time and date at job start Mon Mar 30 2020 02:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35446 * 117.00242 * 2 1 4 4 N 1.31448 * 127.49940 * 179.97438 * 3 2 1 5 5 C 1.31287 * 116.84283 * 179.97438 * 4 3 2 6 6 C 1.50696 * 121.07076 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47393 * 90.00025 * 6 5 4 8 8 H 1.08003 * 119.99475 * 359.97438 * 7 6 5 9 9 C 1.37868 * 119.99879 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00490 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99767 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47230 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47329 * 119.99840 * 11 9 7 14 14 H 1.48500 * 109.47356 * 240.00326 * 11 9 7 15 15 N 1.30137 * 117.85621 * 359.97438 * 5 4 3 16 16 S 1.69955 * 105.73497 * 0.02562 * 15 5 4 17 17 H 1.09002 * 109.47041 * 59.99640 * 1 2 3 18 18 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 19 19 H 1.08996 * 109.47305 * 299.99992 * 1 2 3 20 20 H 1.09003 * 109.47047 * 209.99640 * 6 5 4 21 21 H 1.08996 * 109.47529 * 329.99679 * 6 5 4 22 22 H 0.97000 * 120.00054 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2068 0.0000 4 7 3.3364 1.4463 0.0005 5 6 3.7059 2.7061 -0.0002 6 6 5.1633 3.0891 0.0009 7 6 5.6506 3.2157 -1.4196 8 1 4.9726 3.0363 -2.2410 9 6 6.9616 3.5606 -1.6705 10 7 7.7870 3.7796 -0.6703 11 14 7.5657 3.7168 -3.4313 12 1 6.4496 3.4221 -4.3655 13 1 8.0549 5.0992 -3.6660 14 1 8.6724 2.7541 -3.6622 15 7 2.7729 3.6134 -0.0017 16 16 1.3020 2.7620 -0.0017 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 5.2880 4.0427 0.5140 21 1 5.7405 2.3212 0.5158 22 1 8.7093 4.0226 -0.8469 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261270673.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:56 Heat of formation + Delta-G solvation = -3.757364 kcal Electronic energy + Delta-G solvation = -10355.267887 eV Core-core repulsion = 8230.271758 eV Total energy + Delta-G solvation = -2124.996129 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.036 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.43195 -39.86843 -35.35120 -33.19121 -31.00636 -28.67124 -26.46588 -24.59709 -21.23933 -20.27884 -18.70384 -18.68915 -17.53948 -16.67760 -16.15078 -15.52263 -15.02906 -14.21763 -13.89411 -13.37870 -13.22850 -12.80028 -12.66871 -12.55021 -12.36737 -11.90801 -11.60035 -10.91284 -10.77292 -10.65116 -9.90294 -8.26936 -6.39384 -0.53545 -0.23927 0.55067 1.37338 1.41137 1.41826 1.53655 1.61213 2.40497 3.06525 3.52182 4.15164 4.22330 4.41953 4.61471 4.67025 5.16834 5.22335 5.45846 5.62834 5.98252 6.65168 6.66869 7.27605 8.84803 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.061693 B = 0.008613 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.754979 B = 3250.225379 C = 3346.026271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 O -0.268 6.268 3 C 0.279 3.721 4 N -0.563 5.563 5 C 0.329 3.671 6 C 0.105 3.895 7 C -0.532 4.532 8 H 0.048 0.952 9 C 0.013 3.987 10 N -0.922 5.922 11 Si 0.974 3.026 12 H -0.270 1.270 13 H -0.271 1.271 14 H -0.271 1.271 15 N -0.510 5.510 16 S 0.196 5.804 17 H 0.081 0.919 18 H 0.156 0.844 19 H 0.085 0.915 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 -5.967 0.452 16.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.172 6.172 3 C -0.046 4.046 4 N -0.301 5.301 5 C 0.042 3.958 6 C 0.063 3.937 7 C -0.571 4.571 8 H 0.067 0.933 9 C -0.187 4.187 10 N -0.561 5.561 11 Si 0.797 3.203 12 H -0.195 1.195 13 H -0.196 1.196 14 H -0.196 1.196 15 N -0.343 5.343 16 S 0.330 5.670 17 H 0.100 0.900 18 H 0.174 0.826 19 H 0.103 0.897 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.965 -5.129 0.515 16.776 hybrid contribution 1.052 -0.470 -0.605 1.301 sum -14.912 -5.599 -0.090 15.929 Atomic orbital electron populations 1.24104 0.72070 1.08602 1.04314 1.85926 1.25589 1.19248 1.86437 1.27082 0.91660 0.92634 0.93179 1.67088 1.13870 1.21328 1.27765 1.23802 1.00014 0.81702 0.90321 1.17829 0.80591 0.96856 0.98438 1.21053 0.96241 1.48744 0.91050 0.93330 1.25850 0.96322 0.94138 1.02385 1.70049 1.05965 1.47077 1.33006 0.85274 0.78248 0.78314 0.78431 1.19460 1.19613 1.19615 1.77620 0.97813 1.26114 1.32776 1.84281 1.16977 0.95385 1.70399 0.90019 0.82640 0.89689 0.94849 0.94793 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 10.36 113.37 1.17 1.22 14 2 O -0.27 -7.31 10.55 -87.43 -0.92 -8.24 14 3 C 0.28 9.89 8.62 130.30 1.12 11.02 14 4 N -0.56 -26.00 10.60 -315.89 -3.35 -29.35 14 5 C 0.33 16.34 6.75 139.39 0.94 17.28 14 6 C 0.10 5.93 5.51 29.10 0.16 6.09 14 7 C -0.53 -31.60 9.09 25.60 0.23 -31.37 14 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 14 9 C 0.01 0.73 5.46 84.65 0.46 1.19 14 10 N -0.92 -55.35 13.29 21.44 0.28 -55.07 14 11 Si 0.97 44.94 29.54 68.60 2.03 46.97 14 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 14 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 14 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 14 15 N -0.51 -23.27 12.15 -60.54 -0.74 -24.01 14 16 S 0.20 6.34 22.84 -56.49 -1.29 5.05 14 17 H 0.08 0.91 8.11 -2.39 -0.02 0.89 14 18 H 0.16 0.97 8.14 -2.39 -0.02 0.95 14 19 H 0.08 0.89 8.11 -2.39 -0.02 0.87 14 20 H 0.03 1.96 8.14 -2.39 -0.02 1.94 14 21 H 0.03 2.00 8.14 -2.39 -0.02 1.99 14 22 H 0.27 15.04 8.31 -92.71 -0.77 14.27 14 Total: -1.00 -70.86 222.78 1.34 -69.52 By element: Atomic # 1 Polarization: -11.53 SS G_CDS: 1.23 Total: -10.30 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 4.09 Total: 5.42 kcal Atomic # 7 Polarization: -104.63 SS G_CDS: -3.80 Total: -108.42 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.92 Total: -8.24 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -1.29 Total: 5.05 kcal Total: -70.86 1.34 -69.52 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261270673.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.761 kcal (2) G-P(sol) polarization free energy of solvation -70.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds