Wall clock time and date at job start Mon Mar 30 2020 02:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00170 * 2 1 4 4 C 1.50704 * 109.57335 * 304.01186 * 3 2 1 5 5 H 1.07996 * 120.00151 * 123.11167 * 4 3 2 6 6 C 1.37880 * 119.99475 * 303.11523 * 4 3 2 7 7 N 1.31514 * 119.99979 * 8.07610 * 6 4 3 8 8 Si 1.86793 * 119.99710 * 188.08126 * 6 4 3 9 9 H 1.48503 * 109.47605 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47234 * 119.99975 * 8 6 4 11 11 H 1.48503 * 109.47105 * 239.99677 * 8 6 4 12 12 C 1.54522 * 109.57000 * 64.25254 * 3 2 1 13 13 C 1.45874 * 111.67099 * 42.70057 * 12 3 2 14 14 C 1.53987 * 112.66495 * 61.50069 * 13 12 3 15 15 N 1.44307 * 108.31309 * 278.59995 * 14 13 12 16 16 C 1.47941 * 113.65015 * 95.39278 * 15 14 13 17 17 C 1.50533 * 109.67892 * 183.69237 * 3 2 1 18 18 H 1.08997 * 109.47462 * 55.77732 * 1 2 3 19 19 H 1.09002 * 109.46606 * 175.77608 * 1 2 3 20 20 H 1.08996 * 109.47065 * 295.77494 * 1 2 3 21 21 H 0.97000 * 119.99896 * 179.97438 * 7 6 4 22 22 H 1.08995 * 109.04564 * 282.13460 * 12 3 2 23 23 H 1.09002 * 109.04193 * 163.26380 * 12 3 2 24 24 H 1.09001 * 108.84657 * 300.67784 * 13 12 3 25 25 H 1.09008 * 108.84917 * 182.31788 * 13 12 3 26 26 H 1.09003 * 109.69788 * 158.89699 * 14 13 12 27 27 H 1.08999 * 109.72553 * 38.32551 * 14 13 12 28 28 H 1.00896 * 111.00002 * 221.35048 * 15 14 13 29 29 H 1.08999 * 108.71197 * 79.13231 * 16 15 14 30 30 H 1.09002 * 108.71354 * 197.14464 * 16 15 14 31 31 H 1.09008 * 108.78605 * 92.77263 * 17 3 2 32 32 H 1.09001 * 108.79207 * 211.09532 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4900 2.0897 -1.1770 5 1 0.9937 3.0357 -1.0187 6 6 1.6477 1.5994 -2.4560 7 7 2.1064 0.3808 -2.6412 8 14 1.2101 2.6661 -3.9257 9 1 0.7204 3.9854 -3.4516 10 1 2.4146 2.8608 -4.7722 11 1 0.1480 2.0002 -4.7218 12 6 1.6430 2.0355 1.3114 13 6 1.7572 1.1546 2.4685 14 6 3.1904 0.6315 2.6769 15 7 3.3990 -0.4858 1.7877 16 6 4.0500 -0.1154 0.5119 17 6 3.5086 1.1932 -0.0913 18 1 -0.3634 0.5779 -0.8497 19 1 -0.3632 -1.0249 -0.0757 20 1 -0.3633 0.4469 0.9254 21 1 2.2170 0.0358 -3.5409 22 1 0.6179 2.3990 1.2410 23 1 2.3120 2.8858 1.4444 24 1 1.0886 0.3047 2.3314 25 1 1.4492 1.7019 3.3595 26 1 3.3166 0.3073 3.7099 27 1 3.9068 1.4208 2.4494 28 1 3.9048 -1.2263 2.2501 29 1 5.1204 -0.0040 0.6849 30 1 3.8964 -0.9211 -0.2060 31 1 3.8012 1.2437 -1.1401 32 1 3.9566 2.0339 0.4384 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261272623.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:56 Heat of formation + Delta-G solvation = -38.022367 kcal Electronic energy + Delta-G solvation = -14232.220291 eV Core-core repulsion = 12000.077549 eV Total energy + Delta-G solvation = -2232.142742 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.45317 -35.07244 -32.48139 -31.84319 -30.37030 -25.96046 -25.14915 -24.30235 -22.49439 -19.27373 -18.55851 -16.69779 -15.56122 -14.91168 -14.48454 -13.91464 -13.73015 -13.29479 -12.71789 -12.37771 -12.18523 -11.61804 -11.28313 -11.01973 -10.86653 -10.71098 -10.34960 -10.30819 -9.93053 -9.75062 -9.51618 -9.24140 -8.51807 -8.40665 -7.53521 -7.33549 -5.89951 -4.07516 3.29081 3.38446 3.42192 4.44351 5.02307 5.28026 5.66693 5.74823 5.83849 6.05187 6.09570 6.25462 6.39830 6.57025 6.65338 6.74675 6.77030 6.93151 7.01110 7.07007 7.20728 7.28456 7.35287 7.55429 7.84935 8.04986 8.08051 8.25227 8.37460 8.91701 9.36712 9.65970 11.08880 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047663 B = 0.013950 C = 0.013230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.312153 B = 2006.684860 C = 2115.918634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.340 6.340 3 C 0.253 3.747 4 C -0.556 4.556 5 H 0.053 0.947 6 C 0.080 3.920 7 N -0.847 5.847 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.285 1.285 12 C -0.138 4.138 13 C -0.107 4.107 14 C 0.075 3.925 15 N -0.681 5.681 16 C 0.087 3.913 17 C -0.084 4.084 18 H 0.039 0.961 19 H 0.043 0.957 20 H 0.003 0.997 21 H 0.256 0.744 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.047 0.953 27 H 0.029 0.971 28 H 0.325 0.675 29 H -0.003 1.003 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -0.100 6.473 6.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.258 6.258 3 C 0.214 3.786 4 C -0.594 4.594 5 H 0.071 0.929 6 C -0.126 4.126 7 N -0.482 5.482 8 Si 0.705 3.295 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.176 4.176 13 C -0.146 4.146 14 C -0.055 4.055 15 N -0.311 5.311 16 C -0.041 4.041 17 C -0.122 4.122 18 H 0.057 0.943 19 H 0.062 0.938 20 H 0.021 0.979 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.142 0.858 29 H 0.015 0.985 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.240 -0.336 6.068 6.203 hybrid contribution 0.421 1.073 -0.615 1.307 sum 1.661 0.737 5.453 5.748 Atomic orbital electron populations 1.22099 0.85897 0.98380 0.97769 1.87990 1.15461 1.28351 1.93973 1.18530 0.89536 0.81618 0.88937 1.21618 1.39968 1.06439 0.91408 0.92910 1.24973 0.94695 0.94412 0.98484 1.70160 1.43344 1.13793 1.20926 0.86797 0.78136 0.81167 0.83421 1.19864 1.20974 1.21107 1.21178 1.00359 0.98296 0.97808 1.20467 0.97317 0.99964 0.96804 1.21485 0.96938 0.93069 0.94019 1.58874 1.55994 1.10665 1.05595 1.22010 0.91699 1.00066 0.90353 1.21285 0.96813 0.93095 1.01000 0.94257 0.93820 0.97862 0.93351 0.93567 0.94062 0.90812 0.94842 0.93463 0.95237 0.85815 0.98489 0.90823 0.90165 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.32 9.95 101.05 1.01 2.33 16 2 O -0.34 -8.66 6.73 -35.23 -0.24 -8.90 16 3 C 0.25 6.23 0.29 -92.20 -0.03 6.21 16 4 C -0.56 -15.05 6.44 -34.44 -0.22 -15.27 16 5 H 0.05 1.45 7.76 -52.49 -0.41 1.04 16 6 C 0.08 2.17 4.68 -17.82 -0.08 2.09 16 7 N -0.85 -23.70 11.54 55.43 0.64 -23.06 16 8 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C -0.14 -3.02 3.75 -29.30 -0.11 -3.13 16 13 C -0.11 -2.06 5.12 -29.59 -0.15 -2.21 16 14 C 0.08 1.33 6.15 -4.70 -0.03 1.30 16 15 N -0.68 -12.92 5.50 -113.78 -0.63 -13.54 16 16 C 0.09 1.82 5.86 -2.77 -0.02 1.80 16 17 C -0.08 -1.98 4.49 -27.49 -0.12 -2.10 16 18 H 0.04 0.99 6.77 -51.93 -0.35 0.64 16 19 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 20 H 0.00 0.07 6.23 -51.93 -0.32 -0.26 16 21 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 22 H 0.05 1.02 7.57 -51.93 -0.39 0.63 16 23 H 0.04 0.87 7.59 -51.93 -0.39 0.48 16 24 H 0.07 1.53 6.02 -51.93 -0.31 1.22 16 25 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.53 6.79 -51.93 -0.35 0.18 16 28 H 0.33 5.24 8.89 -39.29 -0.35 4.89 16 29 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 30 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.08 2.10 6.43 -51.92 -0.33 1.76 16 32 H 0.03 0.67 6.65 -51.93 -0.35 0.33 16 LS Contribution 241.09 15.07 3.63 3.63 Total: -1.00 -28.41 241.09 -6.18 -34.59 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.81 Total: 0.34 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 0.24 Total: -8.99 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.01 Total: -36.60 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.24 Total: -8.90 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -28.41 -6.18 -34.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261272623.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.437 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds