Wall clock time and date at job start Mon Mar 30 2020 02:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46699 * 2 1 4 4 C 1.50703 * 109.47325 * 119.99672 * 2 1 3 5 5 H 1.07999 * 119.99847 * 119.99718 * 4 2 1 6 6 C 1.37882 * 119.99964 * 300.00570 * 4 2 1 7 7 N 1.31509 * 119.99616 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99891 * 359.97438 * 6 4 2 9 9 H 1.48494 * 109.47423 * 90.00334 * 8 6 4 10 10 H 1.48504 * 109.47172 * 210.00465 * 8 6 4 11 11 H 1.48499 * 109.47656 * 330.00120 * 8 6 4 12 12 C 1.50698 * 109.47435 * 239.99951 * 2 1 3 13 13 C 1.34496 * 126.57163 * 300.18348 * 12 2 1 14 14 O 1.34371 * 108.44000 * 180.24078 * 13 12 2 15 15 C 1.34302 * 109.47712 * 359.74223 * 14 13 12 16 16 Cl 1.73597 * 125.79824 * 180.02562 * 15 14 13 17 17 C 1.34654 * 108.39989 * 359.97438 * 15 14 13 18 18 H 1.08994 * 109.47199 * 60.00081 * 1 2 3 19 19 H 1.08998 * 109.46960 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.47351 * 299.99969 * 1 2 3 21 21 H 0.97008 * 119.99657 * 179.97438 * 7 6 4 22 22 H 1.07999 * 125.77450 * 359.97438 * 13 12 2 23 23 H 1.08002 * 126.58251 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1373 -0.8595 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9770 1.9955 3.9070 11 1 0.8489 2.1773 1.4923 12 6 2.0324 -0.7104 -1.2304 13 6 1.7876 -1.9873 -1.5746 14 8 2.4159 -2.2428 -2.7346 15 6 3.0610 -1.1393 -3.1469 16 17 4.0074 -0.9979 -4.5954 17 6 2.8481 -0.1611 -2.2465 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.9032 -0.5278 4.4376 22 1 1.1909 -2.6897 -1.0116 23 1 3.2313 0.8478 -2.2893 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261283916.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:17 Heat of formation + Delta-G solvation = -8.835441 kcal Electronic energy + Delta-G solvation = -10604.713235 eV Core-core repulsion = 8445.160446 eV Total energy + Delta-G solvation = -2159.552789 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.52410 -37.95274 -36.97471 -34.19667 -32.37345 -29.64080 -27.06217 -24.24923 -22.59990 -20.94257 -18.65181 -18.47003 -17.19055 -16.63839 -15.98443 -15.16061 -14.84813 -14.15737 -14.03110 -13.64754 -13.19514 -13.07624 -12.89407 -12.48587 -12.13993 -11.86515 -11.30631 -11.23676 -10.73910 -10.44499 -9.28936 -8.27134 -6.31810 0.24756 0.65158 1.34877 1.40877 1.51108 1.67954 2.35387 2.65127 3.08683 3.96987 4.24127 4.36522 4.62852 4.73828 4.91087 5.00269 5.04914 5.21275 5.45911 5.66106 5.67579 6.05810 6.33858 6.74563 7.33235 8.89229 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.067552 B = 0.008881 C = 0.008679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.396055 B = 3151.989435 C = 3225.492269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.035 0.965 4 C -0.512 4.512 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.264 1.264 10 H -0.302 1.302 11 H -0.246 1.246 12 C -0.147 4.147 13 C -0.028 4.028 14 O -0.181 6.181 15 C 0.003 3.997 16 Cl 0.034 6.966 17 C -0.177 4.177 18 H 0.061 0.939 19 H 0.058 0.942 20 H 0.034 0.966 21 H 0.266 0.734 22 H 0.223 0.777 23 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 2.087 -13.419 13.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.049 3.951 3 H 0.053 0.947 4 C -0.550 4.550 5 H 0.053 0.947 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.778 3.222 9 H -0.190 1.190 10 H -0.230 1.230 11 H -0.169 1.169 12 C -0.149 4.149 13 C -0.094 4.094 14 O -0.080 6.080 15 C -0.073 4.073 16 Cl 0.063 6.937 17 C -0.197 4.197 18 H 0.080 0.920 19 H 0.077 0.923 20 H 0.052 0.948 21 H 0.075 0.925 22 H 0.239 0.761 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.266 1.822 -13.537 13.717 hybrid contribution -0.062 0.459 0.618 0.772 sum -1.328 2.281 -12.919 13.186 Atomic orbital electron populations 1.22088 0.96406 1.01655 0.99734 1.17650 0.93154 0.95294 0.88982 0.94693 1.21240 1.31046 1.12509 0.90208 0.94705 1.25860 0.97287 0.99954 0.95329 1.70044 1.47681 1.42565 0.98636 0.85820 0.79167 0.80000 0.77249 1.19017 1.23008 1.16947 1.20614 1.01283 0.95321 0.97656 1.24146 1.01404 0.98374 0.85505 1.83917 1.52762 1.35843 1.35430 1.22430 1.03000 0.87197 0.94658 1.98386 1.67405 1.96507 1.31439 1.21684 1.03180 1.00942 0.93889 0.91983 0.92333 0.94750 0.92540 0.76087 0.81407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.55 8.55 71.98 0.62 -4.94 14 2 C 0.07 3.04 2.27 -12.29 -0.03 3.02 14 3 H 0.03 1.57 7.19 -2.39 -0.02 1.56 14 4 C -0.51 -28.24 8.99 25.60 0.23 -28.01 14 5 H 0.03 2.14 7.96 -2.91 -0.02 2.12 14 6 C 0.01 0.72 5.45 84.66 0.46 1.18 14 7 N -0.95 -58.33 13.96 21.45 0.30 -58.03 14 8 Si 0.95 43.53 24.37 68.60 1.67 45.20 14 9 H -0.26 -11.42 6.87 99.48 0.68 -10.74 14 10 H -0.30 -13.96 7.11 99.48 0.71 -13.26 14 11 H -0.25 -10.35 6.53 99.48 0.65 -9.70 14 12 C -0.15 -5.86 4.84 -19.94 -0.10 -5.95 14 13 C -0.03 -1.01 11.53 66.96 0.77 -0.24 14 14 O -0.18 -6.29 10.65 -3.14 -0.03 -6.33 14 15 C 0.00 0.09 7.93 67.00 0.53 0.62 14 16 Cl 0.03 0.86 29.30 -2.72 -0.08 0.78 14 17 C -0.18 -6.15 10.83 22.23 0.24 -5.91 14 18 H 0.06 2.05 8.14 -2.39 -0.02 2.03 14 19 H 0.06 2.19 8.02 -2.39 -0.02 2.17 14 20 H 0.03 1.39 3.27 -2.39 -0.01 1.38 14 21 H 0.27 15.32 8.31 -92.70 -0.77 14.55 14 22 H 0.22 7.24 8.06 -2.91 -0.02 7.21 14 23 H 0.17 5.09 8.06 -2.91 -0.02 5.07 14 Total: -1.00 -61.90 218.20 5.72 -56.18 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 1.14 Total: 2.40 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 2.73 Total: -40.22 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: 0.30 Total: -58.03 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.03 Total: -6.33 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.67 Total: 45.20 kcal Atomic # 17 Polarization: 0.86 SS G_CDS: -0.08 Total: 0.78 kcal Total: -61.90 5.72 -56.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283916.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.349 kcal (2) G-P(sol) polarization free energy of solvation -61.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds