Wall clock time and date at job start Mon Mar 30 2020 02:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47146 * 2 1 4 4 C 1.50697 * 109.47125 * 240.00023 * 2 1 3 5 5 H 1.08001 * 119.99645 * 240.00166 * 4 2 1 6 6 C 1.37877 * 119.99897 * 60.00124 * 4 2 1 7 7 N 1.31511 * 120.00305 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99671 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46875 * 60.00144 * 8 6 4 10 10 H 1.48497 * 109.46885 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47365 * 300.00271 * 8 6 4 12 12 C 1.50702 * 109.46810 * 119.99715 * 2 1 3 13 13 C 1.34493 * 126.57244 * 60.03292 * 12 2 1 14 14 O 1.34373 * 108.44293 * 180.22263 * 13 12 2 15 15 C 1.34304 * 109.47480 * 359.56305 * 14 13 12 16 16 Cl 1.73607 * 125.80121 * 180.17640 * 15 14 13 17 17 C 1.34655 * 108.39898 * 0.43034 * 15 14 13 18 18 H 1.08996 * 109.46840 * 300.00296 * 1 2 3 19 19 H 1.09003 * 109.46693 * 59.99692 * 1 2 3 20 20 H 1.08999 * 109.47146 * 180.02562 * 1 2 3 21 21 H 0.96996 * 120.00061 * 180.02562 * 7 6 4 22 22 H 1.08002 * 125.77618 * 359.95191 * 13 12 2 23 23 H 1.08000 * 126.58693 * 179.75837 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8270 -0.4199 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0323 -0.7104 1.2305 13 6 1.7907 -1.9884 1.5728 14 8 2.4092 -2.2404 2.7388 15 6 3.0573 -1.1380 3.1493 16 17 3.9980 -0.9946 4.6013 17 6 2.8488 -0.1613 2.2461 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 0.7082 1.1608 -3.4844 22 1 1.1963 -2.6916 1.0084 23 1 3.2319 0.8475 2.2890 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261283917.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:18 Heat of formation + Delta-G solvation = 0.941178 kcal Electronic energy + Delta-G solvation = -10561.398754 eV Core-core repulsion = 8402.269912 eV Total energy + Delta-G solvation = -2159.128843 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.96887 -36.65308 -34.97547 -32.26810 -30.09972 -27.77159 -25.14963 -22.29172 -21.04753 -19.30935 -16.97818 -16.12433 -15.58780 -14.71150 -14.41421 -13.21121 -12.77888 -12.46863 -11.95528 -11.86779 -11.51609 -11.05296 -10.96029 -10.89672 -10.43567 -10.10899 -9.68259 -9.24921 -8.71086 -8.39846 -7.72415 -6.03954 -4.11028 1.62838 2.14652 3.28779 3.31144 3.34764 3.40357 4.16112 4.41555 5.26843 5.55962 5.79188 6.19443 6.50589 6.54660 6.82864 6.90832 7.16973 7.28788 7.51674 7.71024 7.92804 8.06645 8.36361 8.91357 9.54015 11.01850 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.061157 B = 0.008586 C = 0.008228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.729118 B = 3260.359363 C = 3402.211678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.098 3.902 3 H 0.037 0.963 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.119 4.119 13 C -0.042 4.042 14 O -0.183 6.183 15 C -0.001 4.001 16 Cl -0.002 7.002 17 C -0.168 4.168 18 H 0.009 0.991 19 H 0.086 0.914 20 H 0.026 0.974 21 H 0.262 0.738 22 H 0.208 0.792 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -2.817 8.677 9.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.080 3.920 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.075 0.925 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.121 4.121 13 C -0.108 4.108 14 O -0.082 6.082 15 C -0.077 4.077 16 Cl 0.027 6.973 17 C -0.188 4.188 18 H 0.029 0.971 19 H 0.105 0.895 20 H 0.046 0.954 21 H 0.072 0.928 22 H 0.224 0.776 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.289 -2.951 8.815 9.573 hybrid contribution 0.481 -0.337 -0.773 0.971 sum 2.770 -3.288 8.041 9.119 Atomic orbital electron populations 1.21793 0.97590 0.99195 1.00392 1.17354 0.92498 0.95239 0.86934 0.94511 1.21104 1.31362 1.12514 0.89949 0.92536 1.24958 0.95005 0.94990 0.98968 1.69867 1.36521 1.22832 1.23612 0.86627 0.79262 0.79741 0.82206 1.20236 1.21249 1.20259 1.21208 0.98464 0.94172 0.98209 1.23886 1.02576 0.98888 0.85495 1.83876 1.53144 1.35692 1.35454 1.22172 1.03725 0.88151 0.93653 1.98365 1.68851 1.96650 1.33471 1.21571 1.03229 0.99698 0.94335 0.97147 0.89525 0.95441 0.92823 0.77595 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.85 37.16 0.33 -2.78 14 2 C 0.10 2.42 2.68 -92.92 -0.25 2.17 14 3 H 0.04 0.98 8.13 -51.93 -0.42 0.56 14 4 C -0.51 -13.68 8.41 -34.44 -0.29 -13.97 14 5 H 0.06 1.50 7.71 -52.49 -0.40 1.10 14 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 14 7 N -0.89 -24.84 11.32 55.43 0.63 -24.22 14 8 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 14 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 14 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 14 12 C -0.12 -2.57 4.84 -104.74 -0.51 -3.07 14 13 C -0.04 -0.83 11.52 29.41 0.34 -0.49 14 14 O -0.18 -3.45 10.65 5.52 0.06 -3.39 14 15 C 0.00 -0.03 7.94 29.46 0.23 0.21 14 16 Cl 0.00 -0.03 29.30 -51.86 -1.52 -1.55 14 17 C -0.17 -3.24 10.83 -39.65 -0.43 -3.67 14 18 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 14 19 H 0.09 2.24 6.07 -51.93 -0.32 1.92 14 20 H 0.03 0.60 8.02 -51.93 -0.42 0.18 14 21 H 0.26 6.99 8.31 -40.82 -0.34 6.65 14 22 H 0.21 3.58 8.06 -52.49 -0.42 3.15 14 23 H 0.15 2.62 8.06 -52.49 -0.42 2.20 14 LS Contribution 225.02 15.07 3.39 3.39 Total: -1.00 -27.55 225.02 -5.09 -32.65 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -1.96 Total: -2.75 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -0.67 Total: -20.01 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.63 Total: -24.22 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: 0.06 Total: -3.39 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.52 Total: -1.55 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -27.55 -5.09 -32.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261283917.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.587 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds