Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47296 * 2 1 4 4 C 1.50700 * 109.47482 * 120.00001 * 2 1 3 5 5 H 1.08001 * 120.00041 * 119.99683 * 4 2 1 6 6 C 1.37884 * 119.99667 * 300.00569 * 4 2 1 7 7 N 1.31509 * 119.99960 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99632 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46881 * 89.99502 * 8 6 4 10 10 H 1.48496 * 109.46922 * 209.99804 * 8 6 4 11 11 H 1.48500 * 109.47054 * 329.99950 * 8 6 4 12 12 C 1.50700 * 109.47342 * 240.00244 * 2 1 3 13 13 C 1.41410 * 126.58273 * 299.71596 * 12 2 1 14 14 C 1.34492 * 106.85027 * 180.26285 * 13 12 2 15 15 O 1.34375 * 108.44446 * 359.97438 * 14 13 12 16 16 C 1.34298 * 109.47652 * 0.02562 * 15 14 13 17 17 Cl 1.73602 * 125.80297 * 179.97438 * 16 15 14 18 18 H 1.09003 * 109.47296 * 179.97438 * 1 2 3 19 19 H 1.09004 * 109.47258 * 300.00087 * 1 2 3 20 20 H 1.09001 * 109.47176 * 60.00014 * 1 2 3 21 21 H 0.97004 * 119.99950 * 180.02562 * 7 6 4 22 22 H 1.07994 * 126.57428 * 0.25407 * 13 12 2 23 23 H 1.08003 * 125.77548 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9434 0.8301 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9493 5.1120 11 1 2.4860 -2.5662 3.7119 12 6 2.0323 -0.7103 -1.2305 13 6 1.7826 -2.0555 -1.5881 14 6 2.4217 -2.2748 -2.7509 15 8 3.0419 -1.1400 -3.1158 16 6 2.8097 -0.1877 -2.1978 17 17 3.4100 1.4404 -2.2492 18 1 -0.3634 -1.0277 -0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 0.7093 1.1617 3.4844 22 1 1.1921 -2.7697 -1.0336 23 1 2.4336 -3.2053 -3.2991 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261287492.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = -14.306004 kcal Electronic energy + Delta-G solvation = -10728.879808 eV Core-core repulsion = 8569.089798 eV Total energy + Delta-G solvation = -2159.790010 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.41194 -37.81260 -36.78800 -34.04332 -31.65526 -29.62475 -27.18869 -23.97244 -22.35209 -20.95716 -18.62949 -18.06647 -17.05831 -16.59332 -15.83806 -15.04404 -14.60868 -13.89397 -13.51773 -13.34792 -13.06547 -12.82920 -12.80159 -12.31569 -12.16102 -12.04674 -11.55469 -11.10941 -10.45189 -10.36671 -9.20529 -8.07640 -6.21045 0.42370 0.75615 1.43420 1.44192 1.54140 1.78323 2.46265 2.83389 3.20364 4.06828 4.25036 4.77783 4.86873 4.91480 5.09885 5.20067 5.28029 5.57503 5.64693 5.85677 6.06365 6.15415 6.36689 6.86312 7.46232 8.97409 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.040394 B = 0.011739 C = 0.010781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.011423 B = 2384.597229 C = 2596.546096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.093 3.907 3 H 0.014 0.986 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.267 1.267 12 C -0.111 4.111 13 C -0.217 4.217 14 C -0.012 4.012 15 O -0.184 6.184 16 C -0.031 4.031 17 Cl 0.014 6.986 18 H 0.033 0.967 19 H 0.061 0.939 20 H 0.022 0.978 21 H 0.262 0.738 22 H 0.157 0.843 23 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -4.580 -8.611 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 H 0.032 0.968 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.192 1.192 12 C -0.113 4.113 13 C -0.236 4.236 14 C -0.078 4.078 15 O -0.083 6.083 16 C -0.106 4.106 17 Cl 0.043 6.957 18 H 0.052 0.948 19 H 0.080 0.920 20 H 0.041 0.959 21 H 0.071 0.929 22 H 0.175 0.825 23 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.364 -4.266 -8.733 10.003 hybrid contribution 0.213 0.065 1.092 1.115 sum 2.578 -4.201 -7.641 9.093 Atomic orbital electron populations 1.21576 0.97176 0.99331 0.99620 1.17267 0.93082 0.94047 0.88151 0.96799 1.21308 1.31096 1.12359 0.91010 0.93096 1.25695 0.95254 0.95721 1.01696 1.70010 1.37560 1.24029 1.24027 0.85597 0.77981 0.79199 0.79133 1.20476 1.20735 1.19173 1.20909 0.98190 0.95726 0.96518 1.21855 1.06628 0.96132 0.99001 1.24876 0.96338 0.89119 0.97491 1.83884 1.61018 1.19361 1.44008 1.22146 1.07998 0.86522 0.93891 1.98356 1.87608 1.11761 1.97991 0.94751 0.92005 0.95938 0.92892 0.82503 0.72384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.87 71.98 0.64 -5.24 14 2 C 0.09 4.80 2.66 -12.29 -0.03 4.77 14 3 H 0.01 0.78 7.40 -2.39 -0.02 0.76 14 4 C -0.52 -28.76 8.44 25.60 0.22 -28.54 14 5 H 0.05 2.80 7.74 -2.91 -0.02 2.78 14 6 C 0.01 0.82 5.30 84.66 0.45 1.27 14 7 N -0.92 -52.77 11.32 21.45 0.24 -52.53 14 8 Si 0.96 43.52 29.54 68.60 2.03 45.54 14 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 14 10 H -0.28 -12.53 7.11 99.48 0.71 -11.83 14 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 14 12 C -0.11 -4.89 4.78 -19.90 -0.10 -4.99 14 13 C -0.22 -7.87 10.53 22.19 0.23 -7.64 14 14 C -0.01 -0.33 12.09 66.96 0.81 0.48 14 15 O -0.18 -6.36 10.65 -3.14 -0.03 -6.39 14 16 C -0.03 -1.26 7.93 67.00 0.53 -0.73 14 17 Cl 0.01 0.53 28.53 -2.72 -0.08 0.46 14 18 H 0.03 1.59 8.06 -2.39 -0.02 1.57 14 19 H 0.06 3.34 6.07 -2.39 -0.01 3.33 14 20 H 0.02 0.99 8.14 -2.39 -0.02 0.97 14 21 H 0.26 14.31 8.31 -92.71 -0.77 13.54 14 22 H 0.16 5.36 8.06 -2.91 -0.02 5.34 14 23 H 0.26 4.04 8.06 -2.91 -0.02 4.02 14 Total: -1.00 -62.08 223.79 6.12 -55.96 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: 1.21 Total: -2.42 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 2.75 Total: -40.62 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.24 Total: -52.53 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.03 Total: -6.39 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -0.08 Total: 0.46 kcal Total: -62.08 6.12 -55.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287492.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.658 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds