Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99572 * 2 1 4 4 C 1.53000 * 109.46893 * 184.92887 * 3 2 1 5 5 C 1.50692 * 110.37138 * 307.48403 * 4 3 2 6 6 H 1.08001 * 120.00240 * 119.31209 * 5 4 3 7 7 C 1.37874 * 120.00021 * 299.31619 * 5 4 3 8 8 N 1.31519 * 120.00160 * 188.09931 * 7 5 4 9 9 Si 1.86801 * 120.00212 * 8.09520 * 7 5 4 10 10 H 1.48505 * 109.47019 * 84.80332 * 9 7 5 11 11 H 1.48493 * 109.47559 * 204.80506 * 9 7 5 12 12 H 1.48501 * 109.47117 * 324.80896 * 9 7 5 13 13 C 1.54259 * 110.32596 * 185.29688 * 4 3 2 14 14 C 1.54378 * 105.06360 * 241.11175 * 13 4 3 15 15 N 1.48558 * 104.59192 * 336.14248 * 14 13 4 16 16 C 1.46903 * 110.99850 * 159.04484 * 15 14 13 17 17 C 1.48563 * 104.22237 * 39.48742 * 15 14 13 18 18 H 1.08998 * 109.47388 * 299.99629 * 1 2 3 19 19 H 1.09006 * 109.47557 * 60.00168 * 1 2 3 20 20 H 1.09007 * 109.47111 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46936 * 64.93185 * 3 2 1 22 22 H 1.08999 * 109.47355 * 304.93336 * 3 2 1 23 23 H 0.96997 * 119.99922 * 179.97438 * 8 7 5 24 24 H 1.09001 * 110.32374 * 122.20737 * 13 4 3 25 25 H 1.09003 * 110.40553 * 0.05273 * 13 4 3 26 26 H 1.08993 * 110.41669 * 94.92790 * 14 13 4 27 27 H 1.09000 * 110.40513 * 217.37014 * 14 13 4 28 28 H 1.08990 * 109.47210 * 59.87264 * 16 15 14 29 29 H 1.09000 * 109.47160 * 179.87892 * 16 15 14 30 30 H 1.09006 * 109.46686 * 299.87428 * 16 15 14 31 31 H 1.08993 * 110.41178 * 201.73294 * 17 15 14 32 32 H 1.09004 * 110.40799 * 79.29086 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5305 1.1869 -0.1239 5 6 4.0709 0.2505 0.9258 6 1 4.5982 -0.6447 0.6310 7 6 3.8922 0.5366 2.2626 8 7 4.4967 -0.1899 3.1772 9 14 2.7914 1.9562 2.7750 10 1 1.3808 1.4950 2.8271 11 1 3.2030 2.4427 4.1162 12 1 2.9153 3.0596 1.7888 13 6 4.1887 2.5759 0.0069 14 6 4.9169 2.8029 -1.3353 15 7 5.1582 1.4364 -1.8659 16 6 5.3819 1.4673 -3.3175 17 6 3.9164 0.6915 -1.5343 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.7601 1.8145 0.9309 22 1 1.6203 1.8768 -0.8425 23 1 4.3712 0.0116 4.1176 24 1 4.9027 2.5804 0.8306 25 1 3.4299 3.3431 0.1605 26 1 4.2857 3.3703 -2.0190 27 1 5.8626 3.3197 -1.1719 28 1 6.2500 2.0883 -3.5382 29 1 5.5581 0.4544 -3.6796 30 1 4.5033 1.8821 -3.8117 31 1 4.1087 -0.3813 -1.5209 32 1 3.1285 0.9285 -2.2493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261319102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = -19.166774 kcal Electronic energy + Delta-G solvation = -13795.101584 eV Core-core repulsion = 11563.776482 eV Total energy + Delta-G solvation = -2231.325102 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.75058 -36.63955 -33.32012 -31.29753 -28.83508 -26.57944 -25.77842 -24.48117 -23.03793 -20.58058 -19.01794 -16.56455 -15.63431 -15.34178 -15.05586 -14.64647 -14.05298 -13.66418 -13.36633 -13.00361 -12.25749 -12.21121 -11.84149 -11.44622 -11.23706 -10.90845 -10.71918 -10.38052 -10.24629 -10.15465 -9.83055 -9.34347 -8.83382 -8.57999 -8.39009 -7.81099 -5.95219 -3.88462 3.29068 3.34162 3.42294 4.48585 4.56323 4.73704 5.30285 5.50036 5.56604 5.69265 5.70916 5.80070 5.88224 5.95039 6.00100 6.08469 6.13615 6.17138 6.21021 6.34420 6.48613 6.63272 6.89200 6.95310 7.24619 7.50407 7.71589 7.87676 8.04462 8.67907 9.11850 9.68089 11.18991 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.016870 C = 0.013463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.208512 B = 1659.375192 C = 2079.268466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.068 3.932 4 C 0.042 3.958 5 C -0.470 4.470 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.900 5.900 9 Si 0.862 3.138 10 H -0.285 1.285 11 H -0.300 1.300 12 H -0.250 1.250 13 C -0.120 4.120 14 C 0.036 3.964 15 N -0.508 5.508 16 C 0.016 3.984 17 C 0.062 3.938 18 H 0.030 0.970 19 H 0.028 0.972 20 H 0.079 0.921 21 H 0.032 0.968 22 H 0.023 0.977 23 H 0.261 0.739 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 5.566 -8.721 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.275 6.275 3 C -0.009 4.009 4 C 0.040 3.960 5 C -0.507 4.507 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.539 5.539 9 Si 0.693 3.307 10 H -0.213 1.213 11 H -0.228 1.228 12 H -0.176 1.176 13 C -0.158 4.158 14 C -0.092 4.092 15 N -0.231 5.231 16 C -0.134 4.134 17 C -0.065 4.065 18 H 0.049 0.951 19 H 0.047 0.953 20 H 0.097 0.903 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.830 5.114 -8.305 10.478 hybrid contribution -1.712 1.382 0.054 2.201 sum -5.543 6.496 -8.250 11.874 Atomic orbital electron populations 1.22674 0.83858 1.01809 0.98680 1.88103 1.16800 1.27717 1.94850 1.23078 0.96809 0.83891 0.97086 1.19271 0.88416 0.93724 0.94566 1.20653 1.34081 1.07544 0.88465 0.90430 1.24895 0.95209 0.95944 0.96640 1.69896 1.42691 1.40661 1.00650 0.87521 0.81253 0.84418 0.77459 1.21255 1.22790 1.17552 1.22945 0.98907 0.97428 0.96558 1.23092 0.99115 0.90577 0.96413 1.65329 1.35864 1.11013 1.10935 1.22480 0.99646 1.01666 0.89565 1.23075 0.88383 0.99374 0.95678 0.95137 0.95318 0.90254 0.94995 0.95923 0.92919 0.90176 0.93067 0.95361 0.91111 0.92106 0.91737 0.96397 0.90056 0.96060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -8.09 10.05 -35.23 -0.35 -8.44 16 3 C 0.07 1.51 3.93 37.16 0.15 1.66 16 4 C 0.04 0.98 0.50 -154.28 -0.08 0.90 16 5 C -0.47 -13.30 7.96 -34.45 -0.27 -13.57 16 6 H 0.08 2.44 7.78 -52.49 -0.41 2.03 16 7 C 0.07 2.14 5.23 -17.82 -0.09 2.05 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 9 Si 0.86 21.62 23.17 -169.99 -3.94 17.68 16 10 H -0.29 -7.16 7.02 56.52 0.40 -6.76 16 11 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 12 H -0.25 -5.66 4.24 56.52 0.24 -5.42 16 13 C -0.12 -2.58 4.32 -25.35 -0.11 -2.69 16 14 C 0.04 0.67 6.49 -2.18 -0.01 0.65 16 15 N -0.51 -10.01 5.66 -238.23 -1.35 -11.36 16 16 C 0.02 0.24 9.53 60.07 0.57 0.81 16 17 C 0.06 1.32 5.48 -2.18 -0.01 1.31 16 18 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 19 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 20 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 21 H 0.03 0.74 3.18 -51.93 -0.17 0.58 16 22 H 0.02 0.44 7.96 -51.93 -0.41 0.03 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.08 1.87 6.84 -51.93 -0.36 1.51 16 25 H 0.05 1.03 6.24 -51.93 -0.32 0.70 16 26 H 0.03 0.47 7.97 -51.93 -0.41 0.05 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.02 0.26 7.97 -51.93 -0.41 -0.16 16 31 H 0.08 1.84 7.67 -51.93 -0.40 1.44 16 32 H 0.02 0.42 7.50 -51.93 -0.39 0.03 16 LS Contribution 245.92 15.07 3.71 3.71 Total: -1.00 -31.23 245.92 -5.03 -36.26 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.12 Total: -3.25 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 1.25 Total: -7.30 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.57 Total: -38.65 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.35 Total: -8.44 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -3.94 Total: 17.68 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.23 -5.03 -36.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.090 kcal (2) G-P(sol) polarization free energy of solvation -31.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds