Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99572 * 2 1 4 4 C 1.53000 * 109.46893 * 184.92887 * 3 2 1 5 5 C 1.50692 * 110.37138 * 307.48403 * 4 3 2 6 6 H 1.08001 * 120.00240 * 119.31209 * 5 4 3 7 7 C 1.37874 * 120.00021 * 299.31619 * 5 4 3 8 8 N 1.31519 * 120.00160 * 188.09931 * 7 5 4 9 9 Si 1.86801 * 120.00212 * 8.09520 * 7 5 4 10 10 H 1.48505 * 109.47019 * 84.80332 * 9 7 5 11 11 H 1.48493 * 109.47559 * 204.80506 * 9 7 5 12 12 H 1.48501 * 109.47117 * 324.80896 * 9 7 5 13 13 C 1.54259 * 110.32596 * 185.29688 * 4 3 2 14 14 C 1.54378 * 105.06360 * 241.11175 * 13 4 3 15 15 N 1.48558 * 104.59192 * 336.14248 * 14 13 4 16 16 C 1.46903 * 110.99850 * 159.04484 * 15 14 13 17 17 C 1.48563 * 104.22237 * 39.48742 * 15 14 13 18 18 H 1.08998 * 109.47388 * 299.99629 * 1 2 3 19 19 H 1.09006 * 109.47557 * 60.00168 * 1 2 3 20 20 H 1.09007 * 109.47111 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46936 * 64.93185 * 3 2 1 22 22 H 1.08999 * 109.47355 * 304.93336 * 3 2 1 23 23 H 0.96997 * 119.99922 * 179.97438 * 8 7 5 24 24 H 1.09001 * 110.32374 * 122.20737 * 13 4 3 25 25 H 1.09003 * 110.40553 * 0.05273 * 13 4 3 26 26 H 1.08993 * 110.41669 * 94.92790 * 14 13 4 27 27 H 1.09000 * 110.40513 * 217.37014 * 14 13 4 28 28 H 1.08990 * 109.47210 * 59.87264 * 16 15 14 29 29 H 1.09000 * 109.47160 * 179.87892 * 16 15 14 30 30 H 1.09006 * 109.46686 * 299.87428 * 16 15 14 31 31 H 1.08993 * 110.41178 * 201.73294 * 17 15 14 32 32 H 1.09004 * 110.40799 * 79.29086 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5305 1.1869 -0.1239 5 6 4.0709 0.2505 0.9258 6 1 4.5982 -0.6447 0.6310 7 6 3.8922 0.5366 2.2626 8 7 4.4967 -0.1899 3.1772 9 14 2.7914 1.9562 2.7750 10 1 1.3808 1.4950 2.8271 11 1 3.2030 2.4427 4.1162 12 1 2.9153 3.0596 1.7888 13 6 4.1887 2.5759 0.0069 14 6 4.9169 2.8029 -1.3353 15 7 5.1582 1.4364 -1.8659 16 6 5.3819 1.4673 -3.3175 17 6 3.9164 0.6915 -1.5343 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.7601 1.8145 0.9309 22 1 1.6203 1.8768 -0.8425 23 1 4.3712 0.0116 4.1176 24 1 4.9027 2.5804 0.8306 25 1 3.4299 3.3431 0.1605 26 1 4.2857 3.3703 -2.0190 27 1 5.8626 3.3197 -1.1719 28 1 6.2500 2.0883 -3.5382 29 1 5.5581 0.4544 -3.6796 30 1 4.5033 1.8821 -3.8117 31 1 4.1087 -0.3813 -1.5209 32 1 3.1285 0.9285 -2.2493 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = -44.432206 kcal Electronic energy + Delta-G solvation = -13796.197175 eV Core-core repulsion = 11563.776482 eV Total energy + Delta-G solvation = -2232.420694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.38519 -38.20712 -35.17522 -33.25320 -30.39819 -28.04669 -27.41029 -26.34681 -24.61921 -22.09212 -20.88046 -18.50449 -17.39449 -17.06311 -16.58181 -16.19813 -15.78489 -15.10623 -15.00142 -14.78140 -13.92661 -13.77535 -13.42057 -13.07850 -12.83812 -12.43145 -12.24366 -12.14612 -12.05510 -11.85556 -11.57427 -11.10261 -10.81307 -10.58854 -10.24096 -9.23127 -8.19391 -6.16590 1.30197 1.32311 1.43472 2.38507 3.04940 3.13668 3.34366 3.90591 4.11285 4.21640 4.33526 4.43634 4.49209 4.51306 4.58745 4.63380 4.68131 4.79539 4.81114 4.83462 4.99384 5.04466 5.21138 5.26956 5.53173 5.75439 6.07243 6.31401 6.40392 6.54262 6.84399 7.43713 8.99041 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.016870 C = 0.013463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.208512 B = 1659.375192 C = 2079.268466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.396 6.396 3 C 0.069 3.931 4 C 0.030 3.970 5 C -0.465 4.465 6 H 0.021 0.979 7 C 0.012 3.988 8 N -0.957 5.957 9 Si 0.923 3.077 10 H -0.283 1.283 11 H -0.309 1.309 12 H -0.205 1.205 13 C -0.122 4.122 14 C 0.043 3.957 15 N -0.539 5.539 16 C 0.017 3.983 17 C 0.071 3.929 18 H 0.030 0.970 19 H 0.060 0.940 20 H 0.094 0.906 21 H 0.024 0.976 22 H 0.061 0.939 23 H 0.259 0.741 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.004 8.152 -10.752 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.314 6.314 3 C -0.007 4.007 4 C 0.028 3.972 5 C -0.503 4.503 6 H 0.040 0.960 7 C -0.183 4.183 8 N -0.599 5.599 9 Si 0.751 3.249 10 H -0.211 1.211 11 H -0.237 1.237 12 H -0.129 1.129 13 C -0.160 4.160 14 C -0.085 4.085 15 N -0.263 5.263 16 C -0.132 4.132 17 C -0.057 4.057 18 H 0.049 0.951 19 H 0.078 0.922 20 H 0.112 0.888 21 H 0.042 0.958 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.369 7.715 -10.384 14.006 hybrid contribution -1.189 0.445 0.609 1.408 sum -6.559 8.160 -9.775 14.323 Atomic orbital electron populations 1.22935 0.81163 1.03461 1.00134 1.88057 1.19898 1.28343 1.95140 1.23007 0.95374 0.84232 0.98130 1.19332 0.89922 0.93856 0.94054 1.20836 1.32768 1.06516 0.90147 0.96024 1.25737 0.96805 0.99213 0.96567 1.70081 1.45325 1.43558 1.00956 0.86545 0.78631 0.82293 0.77424 1.21080 1.23749 1.12855 1.22831 0.99033 0.96436 0.97721 1.23084 1.00064 0.90254 0.95074 1.65248 1.35181 1.11842 1.14004 1.22538 1.01223 1.02471 0.86945 1.22842 0.89908 0.97873 0.95064 0.95146 0.92185 0.88756 0.95841 0.92114 0.93184 0.92939 0.90773 0.92187 0.89826 0.90164 0.91666 0.94586 0.93202 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -17.29 10.05 -148.98 -1.50 -18.79 16 3 C 0.07 2.85 3.93 71.98 0.28 3.14 16 4 C 0.03 1.36 0.50 -52.03 -0.03 1.33 16 5 C -0.46 -27.20 7.96 25.60 0.20 -26.99 16 6 H 0.02 1.45 7.78 -2.91 -0.02 1.43 16 7 C 0.01 0.71 5.23 84.65 0.44 1.15 16 8 N -0.96 -62.56 13.96 21.45 0.30 -62.26 16 9 Si 0.92 44.58 23.17 68.60 1.59 46.17 16 10 H -0.28 -13.52 7.02 99.48 0.70 -12.82 16 11 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 12 H -0.21 -8.37 4.24 99.48 0.42 -7.94 16 13 C -0.12 -4.88 4.32 31.49 0.14 -4.75 16 14 C 0.04 1.42 6.49 86.45 0.56 1.98 16 15 N -0.54 -20.01 5.66 -907.63 -5.14 -25.15 16 16 C 0.02 0.45 9.53 127.69 1.22 1.67 16 17 C 0.07 2.91 5.48 86.45 0.47 3.38 16 18 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 19 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 20 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 21 H 0.02 1.02 3.18 -2.38 -0.01 1.01 16 22 H 0.06 2.05 7.96 -2.39 -0.02 2.03 16 23 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 24 H 0.05 2.37 6.84 -2.39 -0.02 2.36 16 25 H 0.07 2.60 6.24 -2.39 -0.01 2.59 16 26 H 0.06 1.63 7.97 -2.39 -0.02 1.61 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.04 0.87 7.97 -2.38 -0.02 0.85 16 31 H 0.05 2.31 7.67 -2.39 -0.02 2.29 16 32 H 0.05 1.62 7.50 -2.38 -0.02 1.61 16 Total: -1.00 -70.92 245.92 0.58 -70.34 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 0.78 Total: 6.92 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 4.54 Total: -17.23 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -4.84 Total: -87.41 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.50 Total: -18.79 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.59 Total: 46.17 kcal Total: -70.92 0.58 -70.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.907 kcal (2) G-P(sol) polarization free energy of solvation -70.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds