Wall clock time and date at job start Mon Mar 30 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99938 * 2 1 4 4 H 1.08999 * 109.47292 * 34.88912 * 3 2 1 5 5 C 1.50694 * 109.47380 * 274.88440 * 3 2 1 6 6 H 1.07994 * 120.00278 * 294.89741 * 5 3 2 7 7 C 1.37880 * 119.99736 * 114.89178 * 5 3 2 8 8 N 1.31514 * 119.99896 * 184.80879 * 7 5 3 9 9 Si 1.86794 * 120.00038 * 4.81174 * 7 5 3 10 10 H 1.48507 * 109.47536 * 84.67962 * 9 7 5 11 11 H 1.48506 * 109.47087 * 204.67632 * 9 7 5 12 12 H 1.48498 * 109.47335 * 324.67719 * 9 7 5 13 13 C 1.53002 * 109.46938 * 154.88312 * 3 2 1 14 14 H 1.09000 * 110.27500 * 59.36957 * 13 3 2 15 15 C 1.54597 * 110.31263 * 297.17260 * 13 3 2 16 16 C 1.54938 * 102.92103 * 219.12622 * 15 13 3 17 17 N 1.48541 * 103.22730 * 37.41485 * 16 15 13 18 18 C 1.46901 * 110.99810 * 200.27695 * 17 16 15 19 19 C 1.47903 * 105.81846 * 320.78891 * 17 16 15 20 20 H 1.08999 * 109.46857 * 184.98487 * 1 2 3 21 21 H 1.08998 * 109.46899 * 304.98019 * 1 2 3 22 22 H 1.08994 * 109.47172 * 64.98117 * 1 2 3 23 23 H 0.96998 * 120.00216 * 180.02562 * 8 7 5 24 24 H 1.08997 * 110.72096 * 337.48198 * 15 13 3 25 25 H 1.08993 * 110.72288 * 100.77146 * 15 13 3 26 26 H 1.08994 * 110.67003 * 278.98060 * 16 15 13 27 27 H 1.09001 * 110.66986 * 155.84730 * 16 15 13 28 28 H 1.08996 * 109.47223 * 177.39055 * 18 17 16 29 29 H 1.09000 * 109.47281 * 297.39677 * 18 17 16 30 30 H 1.09005 * 109.47201 * 57.39558 * 18 17 16 31 31 H 1.08993 * 109.91918 * 265.97714 * 19 17 16 32 32 H 1.09003 * 109.91389 * 144.68362 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3879 1.9803 0.5878 5 6 2.1040 1.8136 -1.4156 6 1 2.7486 1.3174 -2.1259 7 6 1.3668 2.9121 -1.8039 8 7 1.3751 3.2986 -3.0610 9 14 0.3563 3.8515 -0.5447 10 1 1.2206 4.8443 0.1428 11 1 -0.7578 4.5553 -1.2294 12 1 -0.1975 2.9018 0.4537 13 6 3.4108 1.2401 0.6123 14 1 4.0416 0.5595 0.0406 15 6 3.3306 0.7883 2.0886 16 6 4.4013 1.6698 2.7794 17 7 4.2722 2.9732 2.0785 18 6 5.4881 3.7813 2.2418 19 6 4.0415 2.6444 0.6551 20 1 -0.3633 -1.0238 0.0893 21 1 -0.3633 0.5892 0.8420 22 1 -0.3633 0.4346 -0.9312 23 1 0.8567 4.0716 -3.3342 24 1 2.3415 0.9892 2.5002 25 1 3.5816 -0.2681 2.1828 26 1 5.3970 1.2514 2.6330 27 1 4.1817 1.7807 3.8413 28 1 5.3850 4.7101 1.6809 29 1 5.6340 4.0088 3.2978 30 1 6.3474 3.2246 1.8680 31 1 4.9889 2.6426 0.1161 32 1 3.3605 3.3710 0.2119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261319434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:11 Heat of formation + Delta-G solvation = -43.150131 kcal Electronic energy + Delta-G solvation = -13603.499330 eV Core-core repulsion = 11371.134231 eV Total energy + Delta-G solvation = -2232.365099 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.67151 -36.42747 -32.75006 -31.83882 -29.25904 -26.75598 -25.58482 -24.92193 -21.72653 -20.64386 -19.16119 -17.15542 -15.85391 -15.22271 -14.88625 -14.31105 -13.88581 -13.69092 -13.36380 -12.71203 -12.56401 -11.98692 -11.91427 -11.46316 -11.17044 -11.12249 -10.93967 -10.67400 -10.30747 -10.19646 -9.95701 -9.63737 -9.10208 -8.70460 -8.07791 -7.99148 -6.17122 -4.20632 3.23716 3.31000 3.34445 4.32295 4.48218 4.82469 5.22498 5.28409 5.32911 5.59863 5.71746 5.74564 5.95543 6.01724 6.06683 6.19307 6.25649 6.32758 6.35684 6.53042 6.57830 6.60699 6.80380 6.94237 7.16913 7.38470 7.46331 7.61637 8.34255 8.57028 8.94632 9.46593 10.95709 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030552 B = 0.015208 C = 0.012182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.241647 B = 1840.652094 C = 2297.867925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.404 6.404 3 C 0.182 3.818 4 H 0.030 0.970 5 C -0.530 4.530 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.890 5.890 9 Si 0.865 3.135 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.264 1.264 13 C -0.077 4.077 14 H 0.071 0.929 15 C -0.117 4.117 16 C 0.032 3.968 17 N -0.529 5.529 18 C 0.018 3.982 19 C 0.052 3.948 20 H 0.062 0.938 21 H 0.021 0.979 22 H 0.039 0.961 23 H 0.265 0.735 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.024 0.976 31 H 0.041 0.959 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -1.337 10.068 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.324 6.324 3 C 0.126 3.874 4 H 0.048 0.952 5 C -0.567 4.567 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.693 3.307 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.189 1.189 13 C -0.096 4.096 14 H 0.089 0.911 15 C -0.155 4.155 16 C -0.096 4.096 17 N -0.254 5.254 18 C -0.131 4.131 19 C -0.075 4.075 20 H 0.081 0.919 21 H 0.039 0.961 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.119 -1.039 10.145 10.665 hybrid contribution -0.048 0.446 0.106 0.461 sum 3.072 -0.593 10.251 10.718 Atomic orbital electron populations 1.22385 0.83663 0.99741 0.99374 1.87749 1.17603 1.31896 1.95169 1.20343 0.89542 0.81778 0.95716 0.95240 1.21441 1.26962 1.12786 0.95535 0.90554 1.25124 0.95526 0.96970 0.94909 1.69914 1.41303 1.26078 1.15517 0.87080 0.80809 0.80835 0.82016 1.19231 1.21385 1.18898 1.21883 0.98454 0.95261 0.94032 0.91082 1.22551 0.98612 0.98290 0.96091 1.23260 0.97897 0.89820 0.98577 1.64799 1.34255 1.15316 1.10982 1.22464 0.90838 0.98336 1.01417 1.22832 0.99828 0.97890 0.86946 0.91936 0.96078 0.94243 0.92470 0.91361 0.91537 0.94301 0.90923 0.91543 0.91968 0.95779 0.94091 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.95 10.83 101.05 1.09 2.05 16 2 O -0.40 -9.65 10.10 -35.23 -0.36 -10.01 16 3 C 0.18 4.43 1.37 -27.89 -0.04 4.39 16 4 H 0.03 0.74 4.14 -51.93 -0.22 0.53 16 5 C -0.53 -14.84 8.02 -34.44 -0.28 -15.11 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.08 2.21 5.43 -17.82 -0.10 2.11 16 8 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 9 Si 0.87 21.36 26.47 -169.99 -4.50 16.86 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.26 -6.28 6.20 56.52 0.35 -5.93 16 13 C -0.08 -1.62 2.79 -89.26 -0.25 -1.87 16 14 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 15 C -0.12 -2.09 6.37 -24.87 -0.16 -2.25 16 16 C 0.03 0.51 6.56 -1.89 -0.01 0.50 16 17 N -0.53 -9.48 5.55 -238.70 -1.33 -10.80 16 18 C 0.02 0.27 9.40 60.07 0.56 0.83 16 19 C 0.05 1.07 5.97 -2.75 -0.02 1.05 16 20 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 21 H 0.02 0.42 7.79 -51.93 -0.40 0.01 16 22 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.04 0.57 7.96 -51.93 -0.41 0.15 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 31 H 0.04 0.80 7.73 -51.93 -0.40 0.40 16 32 H 0.09 2.15 6.31 -51.93 -0.33 1.82 16 LS Contribution 256.35 15.07 3.86 3.86 Total: -1.00 -30.03 256.35 -5.88 -35.92 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.15 Total: -1.54 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 0.81 Total: -8.30 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.55 Total: -36.79 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.36 Total: -10.01 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.50 Total: 16.86 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.03 -5.88 -35.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.233 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds