Wall clock time and date at job start Mon Mar 30 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99938 * 2 1 4 4 H 1.08999 * 109.47292 * 34.88912 * 3 2 1 5 5 C 1.50694 * 109.47380 * 274.88440 * 3 2 1 6 6 H 1.07994 * 120.00278 * 294.89741 * 5 3 2 7 7 C 1.37880 * 119.99736 * 114.89178 * 5 3 2 8 8 N 1.31514 * 119.99896 * 184.80879 * 7 5 3 9 9 Si 1.86794 * 120.00038 * 4.81174 * 7 5 3 10 10 H 1.48507 * 109.47536 * 84.67962 * 9 7 5 11 11 H 1.48506 * 109.47087 * 204.67632 * 9 7 5 12 12 H 1.48498 * 109.47335 * 324.67719 * 9 7 5 13 13 C 1.53002 * 109.46938 * 154.88312 * 3 2 1 14 14 H 1.09000 * 110.27500 * 59.36957 * 13 3 2 15 15 C 1.54597 * 110.31263 * 297.17260 * 13 3 2 16 16 C 1.54938 * 102.92103 * 219.12622 * 15 13 3 17 17 N 1.48541 * 103.22730 * 37.41485 * 16 15 13 18 18 C 1.46901 * 110.99810 * 200.27695 * 17 16 15 19 19 C 1.47903 * 105.81846 * 320.78891 * 17 16 15 20 20 H 1.08999 * 109.46857 * 184.98487 * 1 2 3 21 21 H 1.08998 * 109.46899 * 304.98019 * 1 2 3 22 22 H 1.08994 * 109.47172 * 64.98117 * 1 2 3 23 23 H 0.96998 * 120.00216 * 180.02562 * 8 7 5 24 24 H 1.08997 * 110.72096 * 337.48198 * 15 13 3 25 25 H 1.08993 * 110.72288 * 100.77146 * 15 13 3 26 26 H 1.08994 * 110.67003 * 278.98060 * 16 15 13 27 27 H 1.09001 * 110.66986 * 155.84730 * 16 15 13 28 28 H 1.08996 * 109.47223 * 177.39055 * 18 17 16 29 29 H 1.09000 * 109.47281 * 297.39677 * 18 17 16 30 30 H 1.09005 * 109.47201 * 57.39558 * 18 17 16 31 31 H 1.08993 * 109.91918 * 265.97714 * 19 17 16 32 32 H 1.09003 * 109.91389 * 144.68362 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3879 1.9803 0.5878 5 6 2.1040 1.8136 -1.4156 6 1 2.7486 1.3174 -2.1259 7 6 1.3668 2.9121 -1.8039 8 7 1.3751 3.2986 -3.0610 9 14 0.3563 3.8515 -0.5447 10 1 1.2206 4.8443 0.1428 11 1 -0.7578 4.5553 -1.2294 12 1 -0.1975 2.9018 0.4537 13 6 3.4108 1.2401 0.6123 14 1 4.0416 0.5595 0.0406 15 6 3.3306 0.7883 2.0886 16 6 4.4013 1.6698 2.7794 17 7 4.2722 2.9732 2.0785 18 6 5.4881 3.7813 2.2418 19 6 4.0415 2.6444 0.6551 20 1 -0.3633 -1.0238 0.0893 21 1 -0.3633 0.5892 0.8420 22 1 -0.3633 0.4346 -0.9312 23 1 0.8567 4.0716 -3.3342 24 1 2.3415 0.9892 2.5002 25 1 3.5816 -0.2681 2.1828 26 1 5.3970 1.2514 2.6330 27 1 4.1817 1.7807 3.8413 28 1 5.3850 4.7101 1.6809 29 1 5.6340 4.0088 3.2978 30 1 6.3474 3.2246 1.8680 31 1 4.9889 2.6426 0.1161 32 1 3.3605 3.3710 0.2119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261319434.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:11 Heat of formation + Delta-G solvation = -65.610493 kcal Electronic energy + Delta-G solvation = -13604.473284 eV Core-core repulsion = 11371.134231 eV Total energy + Delta-G solvation = -2233.339053 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.20862 -38.17466 -34.81550 -33.45721 -30.84712 -28.44053 -27.43136 -26.30792 -23.56007 -21.99071 -20.86689 -19.28031 -17.54678 -16.77982 -16.62547 -16.07471 -15.45488 -15.25399 -14.98993 -14.63901 -13.99487 -13.66762 -13.52918 -13.10880 -12.90902 -12.66761 -12.35014 -12.22111 -11.95665 -11.87144 -11.71125 -11.53214 -10.95335 -10.87103 -10.01605 -9.35503 -8.38352 -6.46715 1.26095 1.31247 1.36680 2.24129 2.85294 3.17482 3.33501 3.87052 3.92219 4.24276 4.41126 4.46238 4.50209 4.57908 4.64968 4.68895 4.77725 4.80143 4.90473 4.98048 5.05289 5.09138 5.17746 5.31602 5.45679 5.52281 5.96275 6.16335 6.18991 6.56468 6.74228 7.25520 8.78587 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030552 B = 0.015208 C = 0.012182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.241647 B = 1840.652094 C = 2297.867925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.415 6.415 3 C 0.188 3.812 4 H 0.029 0.971 5 C -0.533 4.533 6 H 0.029 0.971 7 C 0.030 3.970 8 N -0.937 5.937 9 Si 0.924 3.076 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.247 1.247 13 C -0.082 4.082 14 H 0.059 0.941 15 C -0.111 4.111 16 C 0.039 3.961 17 N -0.544 5.544 18 C 0.017 3.983 19 C 0.058 3.942 20 H 0.101 0.899 21 H 0.034 0.966 22 H 0.017 0.983 23 H 0.269 0.731 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -1.452 12.888 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.335 6.335 3 C 0.132 3.868 4 H 0.046 0.954 5 C -0.571 4.571 6 H 0.048 0.952 7 C -0.170 4.170 8 N -0.577 5.577 9 Si 0.748 3.252 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.171 1.171 13 C -0.102 4.102 14 H 0.078 0.922 15 C -0.149 4.149 16 C -0.088 4.088 17 N -0.269 5.269 18 C -0.131 4.131 19 C -0.070 4.070 20 H 0.119 0.881 21 H 0.053 0.947 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.095 -1.169 12.982 13.397 hybrid contribution -0.006 0.409 -0.832 0.927 sum 3.090 -0.760 12.150 12.560 Atomic orbital electron populations 1.22619 0.82048 1.02394 0.98748 1.87719 1.19447 1.31273 1.95086 1.20251 0.91430 0.81828 0.93306 0.95377 1.21595 1.25935 1.12708 0.96858 0.95246 1.25875 0.96680 0.97787 0.96624 1.70046 1.42884 1.27053 1.17698 0.86126 0.79372 0.79805 0.79877 1.18395 1.20841 1.17098 1.21855 0.96164 0.95808 0.96339 0.92235 1.22507 0.99327 0.99764 0.93276 1.23313 0.97943 0.88194 0.99375 1.64759 1.36459 1.16738 1.08896 1.22548 0.89757 0.97696 1.03143 1.22606 0.98939 0.96446 0.89009 0.88105 0.94710 0.96440 0.92228 0.91844 0.89867 0.92693 0.88288 0.91988 0.89331 0.94882 0.94117 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 10.83 113.37 1.23 2.77 16 2 O -0.42 -19.46 10.10 -148.98 -1.50 -20.97 16 3 C 0.19 9.12 1.37 29.85 0.04 9.17 16 4 H 0.03 1.38 4.14 -2.39 -0.01 1.37 16 5 C -0.53 -30.86 8.02 25.60 0.21 -30.65 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 7 C 0.03 1.71 5.43 84.66 0.46 2.17 16 8 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 9 Si 0.92 44.09 26.47 68.60 1.82 45.91 16 10 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.25 -10.99 6.20 99.48 0.62 -10.37 16 13 C -0.08 -3.42 2.79 -9.91 -0.03 -3.45 16 14 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 15 C -0.11 -3.64 6.37 31.80 0.20 -3.43 16 16 C 0.04 1.08 6.56 86.65 0.57 1.65 16 17 N -0.54 -18.08 5.55 -909.13 -5.05 -23.13 16 18 C 0.02 0.44 9.40 127.69 1.20 1.64 16 19 C 0.06 2.34 5.97 86.45 0.52 2.85 16 20 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 21 H 0.03 1.29 7.79 -2.39 -0.02 1.27 16 22 H 0.02 0.75 8.10 -2.39 -0.02 0.73 16 23 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 24 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.05 1.37 7.96 -2.39 -0.02 1.35 16 27 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.03 0.81 8.00 -2.38 -0.02 0.79 16 31 H 0.04 1.59 7.73 -2.39 -0.02 1.57 16 32 H 0.06 2.73 6.31 -2.39 -0.02 2.71 16 Total: -1.00 -65.87 256.35 0.94 -64.94 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.98 Total: 8.40 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.39 Total: -17.29 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -4.75 Total: -81.00 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -1.50 Total: -20.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.82 Total: 45.91 kcal Total: -65.87 0.94 -64.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261319434.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.674 kcal (2) G-P(sol) polarization free energy of solvation -65.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds