Wall clock time and date at job start Mon Mar 30 2020 02:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46844 * 110.99922 * 2 1 4 4 C 1.53041 * 109.52181 * 174.15718 * 3 2 1 5 5 C 1.53120 * 109.27726 * 59.18462 * 4 3 2 6 6 C 1.53121 * 109.16062 * 302.34620 * 5 4 3 7 7 C 1.50703 * 109.50015 * 297.71292 * 6 5 4 8 8 H 1.07995 * 120.00491 * 124.49042 * 7 6 5 9 9 C 1.37875 * 120.00172 * 304.48848 * 7 6 5 10 10 N 1.31521 * 119.99817 * 352.08268 * 9 7 6 11 11 Si 1.86794 * 120.00365 * 172.08308 * 9 7 6 12 12 H 1.48495 * 109.47432 * 59.99800 * 11 9 7 13 13 H 1.48501 * 109.47470 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47143 * 299.99923 * 11 9 7 15 15 C 1.52994 * 109.53496 * 177.61625 * 6 5 4 16 16 O 1.42910 * 109.47201 * 174.91519 * 15 6 5 17 17 C 1.46846 * 110.99880 * 235.79245 * 2 1 3 18 18 H 1.09002 * 109.47053 * 184.20077 * 1 2 3 19 19 H 1.08990 * 109.47253 * 304.20867 * 1 2 3 20 20 H 1.09006 * 109.46785 * 64.20935 * 1 2 3 21 21 H 1.08995 * 109.46760 * 294.17803 * 3 2 1 22 22 H 1.09002 * 109.46187 * 54.15662 * 3 2 1 23 23 H 1.09005 * 109.50374 * 179.12029 * 4 3 2 24 24 H 1.08994 * 109.50464 * 299.20249 * 4 3 2 25 25 H 1.09001 * 109.52291 * 182.43812 * 5 4 3 26 26 H 1.09003 * 109.52094 * 62.24506 * 5 4 3 27 27 H 0.96998 * 120.00290 * 5.84610 * 10 9 7 28 28 H 1.08997 * 109.47339 * 294.91446 * 15 6 5 29 29 H 1.08999 * 109.47571 * 54.91305 * 15 6 5 30 30 H 0.96700 * 114.00033 * 179.97438 * 16 15 6 31 31 H 1.09001 * 109.46489 * 65.82746 * 17 2 1 32 32 H 1.08995 * 109.45956 * 305.84933 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5181 -0.8714 -1.0209 7 6 3.8820 -1.5796 0.2586 8 1 3.1064 -1.9904 0.8879 9 6 5.2052 -1.7029 0.6260 10 7 6.1557 -1.3439 -0.2091 11 14 5.6479 -2.3800 2.3097 12 1 5.1075 -3.7562 2.4476 13 1 7.1251 -2.4105 2.4583 14 1 5.0630 -1.5108 3.3622 15 6 4.0680 -1.6565 -2.2134 16 8 3.5999 -3.0055 -2.1523 17 6 1.9952 -0.7707 -1.1338 18 1 -0.3633 -1.0249 0.0753 19 1 -0.3633 0.5777 0.8498 20 1 -0.3633 0.4472 -0.9254 21 1 1.7324 1.8609 -0.9375 22 1 1.5635 1.9256 0.8331 23 1 3.9099 2.3512 0.1311 24 1 3.7813 0.8573 1.0910 25 1 5.1998 0.4714 -0.8904 26 1 3.8886 1.0355 -1.9559 27 1 5.9274 -0.9143 -1.0482 28 1 3.7272 -1.1954 -3.1403 29 1 5.1575 -1.6483 -2.1827 30 1 3.9099 -3.5626 -2.8794 31 1 1.7325 -0.2708 -2.0660 32 1 1.5634 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:58 Heat of formation + Delta-G solvation = -38.548137 kcal Electronic energy + Delta-G solvation = -14028.374302 eV Core-core repulsion = 11796.208760 eV Total energy + Delta-G solvation = -2232.165541 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.67532 -35.75016 -33.77047 -31.27916 -30.02375 -26.10336 -24.77757 -24.51554 -21.96171 -20.41747 -18.69207 -16.60100 -16.17093 -14.94162 -14.27575 -14.02334 -13.65520 -13.41886 -12.90523 -12.78884 -12.18774 -11.80416 -11.61233 -11.22662 -11.12625 -10.74737 -10.61037 -10.25398 -9.98893 -9.79811 -9.43767 -9.24541 -8.86701 -8.32326 -7.98626 -7.46134 -6.00650 -3.75719 3.56986 3.58414 3.76529 4.66841 4.71993 5.39427 5.52944 5.65094 5.72274 5.82886 5.94291 6.10840 6.16459 6.23017 6.26195 6.36011 6.42225 6.51626 6.63328 6.80778 6.85388 7.08152 7.19803 7.34665 7.57497 7.91084 7.93915 8.43035 8.73000 8.75418 9.10667 9.86277 11.24112 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030399 B = 0.016352 C = 0.014142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.862866 B = 1711.936660 C = 1979.472530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.524 5.524 3 C 0.065 3.935 4 C -0.099 4.099 5 C -0.120 4.120 6 C 0.059 3.941 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.015 3.985 10 N -0.933 5.933 11 Si 1.063 2.937 12 H -0.291 1.291 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.079 3.921 16 O -0.553 6.553 17 C 0.088 3.912 18 H 0.062 0.938 19 H 0.058 0.942 20 H 0.011 0.989 21 H 0.014 0.986 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.020 0.980 27 H 0.270 0.730 28 H 0.000 1.000 29 H 0.057 0.943 30 H 0.351 0.649 31 H -0.001 1.001 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.064 3.204 -2.112 7.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.248 5.248 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.158 4.158 6 C 0.058 3.942 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.185 4.185 10 N -0.577 5.577 11 Si 0.893 3.107 12 H -0.218 1.218 13 H -0.214 1.214 14 H -0.217 1.217 15 C 0.000 4.000 16 O -0.354 6.354 17 C -0.040 4.040 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.029 0.971 21 H 0.032 0.968 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.018 0.982 29 H 0.075 0.925 30 H 0.193 0.807 31 H 0.017 0.983 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.932 2.770 -0.159 5.659 hybrid contribution -1.369 0.688 -2.328 2.787 sum -6.301 3.459 -2.487 7.606 Atomic orbital electron populations 1.22324 0.89337 1.01430 0.99009 1.61764 1.05169 1.12999 1.44837 1.22008 0.96996 0.89106 0.98193 1.21375 0.92907 0.97804 1.01608 1.21733 1.02704 0.96334 0.95029 1.18384 0.89760 0.91285 0.94782 1.21534 0.94222 1.36310 1.04381 0.92814 1.25553 0.92728 0.96720 1.03509 1.70942 1.35312 1.40395 1.11032 0.83627 0.75570 0.76141 0.75376 1.21831 1.21369 1.21713 1.22578 0.98968 0.82260 0.96200 1.86637 1.75551 1.22325 1.50928 1.21986 0.97784 0.96338 0.87858 0.91933 0.92278 0.97096 0.96788 0.92235 0.93869 0.89876 0.90067 0.96088 0.91322 0.98208 0.92487 0.80685 0.98281 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.59 60.06 0.58 1.04 16 2 N -0.52 -10.95 4.52 -242.97 -1.10 -12.04 16 3 C 0.07 1.25 5.46 -3.83 -0.02 1.23 16 4 C -0.10 -2.10 5.84 -26.65 -0.16 -2.26 16 5 C -0.12 -2.77 4.45 -26.61 -0.12 -2.89 16 6 C 0.06 1.44 0.34 -155.58 -0.05 1.39 16 7 C -0.53 -14.57 6.02 -34.44 -0.21 -14.77 16 8 H 0.05 1.58 7.76 -52.49 -0.41 1.17 16 9 C 0.02 0.44 5.11 -17.82 -0.09 0.34 16 10 N -0.93 -27.19 12.45 55.43 0.69 -26.50 16 11 Si 1.06 25.94 29.91 -169.99 -5.08 20.86 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.08 1.86 5.65 37.15 0.21 2.07 16 16 O -0.55 -12.77 12.70 -35.23 -0.45 -13.22 16 17 C 0.09 1.98 4.02 -3.83 -0.02 1.96 16 18 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 19 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 20 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 21 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 22 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.08 1.98 7.36 -51.93 -0.38 1.60 16 25 H 0.08 2.06 5.21 -51.93 -0.27 1.79 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.27 7.62 3.27 -40.82 -0.13 7.49 16 28 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 29 H 0.06 1.45 5.38 -51.93 -0.28 1.17 16 30 H 0.35 6.19 9.12 45.56 0.42 6.60 16 31 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.07 1.60 7.84 -51.93 -0.41 1.19 16 LS Contribution 246.49 15.07 3.71 3.71 Total: -1.00 -30.80 246.49 -6.16 -36.96 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -4.06 Total: 2.12 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 0.12 Total: -11.89 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.41 Total: -38.54 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.45 Total: -13.22 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.80 -6.16 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.585 kcal (2) G-P(sol) polarization free energy of solvation -30.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds