Wall clock time and date at job start Mon Mar 30 2020 02:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46844 * 110.99922 * 2 1 4 4 C 1.53041 * 109.52181 * 174.15718 * 3 2 1 5 5 C 1.53120 * 109.27726 * 59.18462 * 4 3 2 6 6 C 1.53121 * 109.16062 * 302.34620 * 5 4 3 7 7 C 1.50703 * 109.50015 * 297.71292 * 6 5 4 8 8 H 1.07995 * 120.00491 * 124.49042 * 7 6 5 9 9 C 1.37875 * 120.00172 * 304.48848 * 7 6 5 10 10 N 1.31521 * 119.99817 * 352.08268 * 9 7 6 11 11 Si 1.86794 * 120.00365 * 172.08308 * 9 7 6 12 12 H 1.48495 * 109.47432 * 59.99800 * 11 9 7 13 13 H 1.48501 * 109.47470 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47143 * 299.99923 * 11 9 7 15 15 C 1.52994 * 109.53496 * 177.61625 * 6 5 4 16 16 O 1.42910 * 109.47201 * 174.91519 * 15 6 5 17 17 C 1.46846 * 110.99880 * 235.79245 * 2 1 3 18 18 H 1.09002 * 109.47053 * 184.20077 * 1 2 3 19 19 H 1.08990 * 109.47253 * 304.20867 * 1 2 3 20 20 H 1.09006 * 109.46785 * 64.20935 * 1 2 3 21 21 H 1.08995 * 109.46760 * 294.17803 * 3 2 1 22 22 H 1.09002 * 109.46187 * 54.15662 * 3 2 1 23 23 H 1.09005 * 109.50374 * 179.12029 * 4 3 2 24 24 H 1.08994 * 109.50464 * 299.20249 * 4 3 2 25 25 H 1.09001 * 109.52291 * 182.43812 * 5 4 3 26 26 H 1.09003 * 109.52094 * 62.24506 * 5 4 3 27 27 H 0.96998 * 120.00290 * 5.84610 * 10 9 7 28 28 H 1.08997 * 109.47339 * 294.91446 * 15 6 5 29 29 H 1.08999 * 109.47571 * 54.91305 * 15 6 5 30 30 H 0.96700 * 114.00033 * 179.97438 * 16 15 6 31 31 H 1.09001 * 109.46489 * 65.82746 * 17 2 1 32 32 H 1.08995 * 109.45956 * 305.84933 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5181 -0.8714 -1.0209 7 6 3.8820 -1.5796 0.2586 8 1 3.1064 -1.9904 0.8879 9 6 5.2052 -1.7029 0.6260 10 7 6.1557 -1.3439 -0.2091 11 14 5.6479 -2.3800 2.3097 12 1 5.1075 -3.7562 2.4476 13 1 7.1251 -2.4105 2.4583 14 1 5.0630 -1.5108 3.3622 15 6 4.0680 -1.6565 -2.2134 16 8 3.5999 -3.0055 -2.1523 17 6 1.9952 -0.7707 -1.1338 18 1 -0.3633 -1.0249 0.0753 19 1 -0.3633 0.5777 0.8498 20 1 -0.3633 0.4472 -0.9254 21 1 1.7324 1.8609 -0.9375 22 1 1.5635 1.9256 0.8331 23 1 3.9099 2.3512 0.1311 24 1 3.7813 0.8573 1.0910 25 1 5.1998 0.4714 -0.8904 26 1 3.8886 1.0355 -1.9559 27 1 5.9274 -0.9143 -1.0482 28 1 3.7272 -1.1954 -3.1403 29 1 5.1575 -1.6483 -2.1827 30 1 3.9099 -3.5626 -2.8794 31 1 1.7325 -0.2708 -2.0660 32 1 1.5634 -1.7715 -1.1242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325031.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:58 Heat of formation + Delta-G solvation = -61.496581 kcal Electronic energy + Delta-G solvation = -14029.369421 eV Core-core repulsion = 11796.208760 eV Total energy + Delta-G solvation = -2233.160661 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.41575 -37.49224 -35.62145 -33.07761 -31.85322 -27.66658 -26.64955 -26.44191 -23.62172 -22.10483 -20.61338 -18.55779 -17.98286 -16.54150 -15.96144 -15.71993 -15.56862 -15.15884 -14.70391 -14.50103 -13.84659 -13.42754 -13.28190 -13.00405 -12.72537 -12.60968 -12.52415 -11.98514 -11.89283 -11.60088 -11.17945 -11.05278 -10.70519 -10.36708 -10.03946 -9.01180 -8.17658 -5.93682 1.57780 1.64216 1.82666 2.69288 3.17068 3.43993 3.69821 4.13524 4.14275 4.32219 4.36433 4.53098 4.57974 4.61632 4.67261 4.72382 4.78399 4.94106 4.98183 5.03342 5.07048 5.28161 5.39056 5.59762 5.75876 6.26312 6.42213 6.46692 6.52549 6.94311 7.16117 7.72498 9.08422 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030399 B = 0.016352 C = 0.014142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.862866 B = 1711.936660 C = 1979.472530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.551 5.551 3 C 0.069 3.931 4 C -0.098 4.098 5 C -0.116 4.116 6 C 0.044 3.956 7 C -0.525 4.525 8 H 0.028 0.972 9 C -0.026 4.026 10 N -0.956 5.956 11 Si 1.097 2.903 12 H -0.286 1.286 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.083 3.917 16 O -0.572 6.572 17 C 0.098 3.902 18 H 0.060 0.940 19 H 0.080 0.920 20 H 0.026 0.974 21 H 0.030 0.970 22 H 0.083 0.917 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.270 0.730 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.373 0.627 31 H 0.011 0.989 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.266 4.102 -2.197 8.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.276 5.276 3 C -0.059 4.059 4 C -0.136 4.136 5 C -0.154 4.154 6 C 0.044 3.956 7 C -0.563 4.563 8 H 0.047 0.953 9 C -0.222 4.222 10 N -0.601 5.601 11 Si 0.923 3.077 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.005 3.995 16 O -0.377 6.377 17 C -0.029 4.029 18 H 0.079 0.921 19 H 0.098 0.902 20 H 0.044 0.956 21 H 0.048 0.952 22 H 0.102 0.898 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.052 0.948 30 H 0.219 0.781 31 H 0.029 0.971 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.152 3.666 -0.259 7.166 hybrid contribution -1.031 0.392 -2.341 2.587 sum -7.182 4.057 -2.599 8.649 Atomic orbital electron populations 1.22366 0.86795 1.02018 1.00690 1.61696 1.07670 1.13897 1.44301 1.22005 0.95276 0.88648 0.99969 1.21339 0.94823 0.98448 0.98971 1.21641 1.00929 0.96088 0.96759 1.18512 0.91584 0.91819 0.93715 1.21603 0.93395 1.36011 1.05331 0.95327 1.26482 0.93099 0.97099 1.05546 1.70983 1.35747 1.41741 1.11623 0.83164 0.75243 0.76161 0.73107 1.21242 1.21563 1.20417 1.22438 0.97503 0.82630 0.96974 1.86573 1.75762 1.22623 1.52693 1.21735 0.96117 0.95945 0.89151 0.92106 0.90169 0.95578 0.95225 0.89839 0.91356 0.93211 0.92812 0.94251 0.91468 0.95694 0.94776 0.78074 0.97124 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.59 127.69 1.22 2.12 16 2 N -0.55 -21.86 4.52 -922.61 -4.17 -26.02 16 3 C 0.07 2.44 5.46 86.33 0.47 2.91 16 4 C -0.10 -4.00 5.84 30.65 0.18 -3.82 16 5 C -0.12 -5.25 4.45 30.67 0.14 -5.11 16 6 C 0.04 2.15 0.34 -52.87 -0.02 2.14 16 7 C -0.52 -29.24 6.02 25.60 0.15 -29.09 16 8 H 0.03 1.70 7.76 -2.91 -0.02 1.68 16 9 C -0.03 -1.47 5.11 84.65 0.43 -1.03 16 10 N -0.96 -56.36 12.45 21.45 0.27 -56.10 16 11 Si 1.10 52.63 29.91 68.60 2.05 54.69 16 12 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 C 0.08 3.88 5.65 71.98 0.41 4.29 16 16 O -0.57 -26.08 12.70 -148.98 -1.89 -27.97 16 17 C 0.10 4.29 4.02 86.33 0.35 4.63 16 18 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 19 H 0.08 2.11 8.09 -2.39 -0.02 2.09 16 20 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 21 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.08 2.56 8.09 -2.39 -0.02 2.54 16 23 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 24 H 0.05 2.35 7.36 -2.39 -0.02 2.33 16 25 H 0.05 2.73 5.21 -2.39 -0.01 2.72 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.27 15.45 3.27 -92.71 -0.30 15.14 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.03 1.74 5.38 -2.39 -0.01 1.73 16 30 H 0.37 12.81 9.12 -74.06 -0.68 12.13 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 2.26 7.84 -2.39 -0.02 2.24 16 Total: -1.00 -65.14 246.49 0.48 -64.67 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.88 Total: 13.71 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 3.33 Total: -22.97 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.90 Total: -82.12 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -1.89 Total: -27.97 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 2.05 Total: 54.69 kcal Total: -65.14 0.48 -64.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325031.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.169 kcal (2) G-P(sol) polarization free energy of solvation -65.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds