Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00508 * 2 1 4 4 C 1.52994 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47197 * 305.00019 * 4 3 2 6 6 C 1.50701 * 109.47392 * 65.00011 * 4 3 2 7 7 H 1.08001 * 119.99926 * 240.00793 * 6 4 3 8 8 C 1.37875 * 119.99860 * 59.99655 * 6 4 3 9 9 N 1.31509 * 120.00242 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 119.99620 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47620 * 60.00521 * 10 8 6 12 12 H 1.48509 * 109.47008 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47553 * 300.00017 * 10 8 6 14 14 C 1.53001 * 109.47584 * 185.00248 * 4 3 2 15 15 H 1.09007 * 110.86732 * 303.84674 * 14 4 3 16 16 C 1.55141 * 110.99649 * 179.97438 * 14 4 3 17 17 C 1.54311 * 103.01761 * 206.21559 * 16 14 4 18 18 N 1.47440 * 107.23978 * 22.28190 * 17 16 14 19 19 C 1.47846 * 108.56252 * 0.99041 * 18 17 16 20 20 H 1.08998 * 109.47619 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47129 * 300.00538 * 1 2 3 22 22 H 1.09000 * 109.47012 * 59.99649 * 1 2 3 23 23 H 1.09004 * 109.47411 * 59.99281 * 3 2 1 24 24 H 1.09006 * 109.47217 * 300.00283 * 3 2 1 25 25 H 0.96998 * 120.00537 * 179.97438 * 9 8 6 26 26 H 1.09003 * 110.70280 * 87.82861 * 16 14 4 27 27 H 1.09002 * 110.69976 * 324.59675 * 16 14 4 28 28 H 1.09007 * 109.88857 * 262.87562 * 17 16 14 29 29 H 1.09002 * 109.88684 * 141.69047 * 17 16 14 30 30 H 1.00901 * 111.00072 * 123.25293 * 18 17 16 31 31 H 1.08997 * 110.37447 * 94.73397 * 19 18 17 32 32 H 1.09004 * 110.37450 * 217.07700 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8514 0.5680 0.8409 6 6 3.9883 0.5464 -1.2886 7 1 4.5374 -0.3833 -1.2668 8 6 3.7014 1.1495 -2.4948 9 7 3.0331 2.2818 -2.5214 10 14 4.2622 0.3583 -4.0913 11 1 3.6580 -0.9927 -4.2132 12 1 3.8323 1.1985 -5.2379 13 1 5.7426 0.2404 -4.0922 14 6 4.1576 2.5766 0.1251 15 1 3.8026 3.2337 -0.6689 16 6 5.7068 2.4949 0.1287 17 6 6.1198 3.7607 0.9087 18 7 4.9663 4.1604 1.7354 19 6 3.8733 3.1885 1.5196 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6886 1.8464 0.8899 24 1 1.6887 1.8463 -0.8900 25 1 2.8315 2.7063 -3.3699 26 1 6.0966 2.5248 -0.8888 27 1 6.0441 1.5965 0.6456 28 1 6.3713 4.5602 0.2117 29 1 6.9751 3.5401 1.5475 30 1 5.2198 4.2086 2.7108 31 1 3.8975 2.4138 2.2859 32 1 2.9084 3.6957 1.5218 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -51.147360 kcal Electronic energy + Delta-G solvation = -13540.402363 eV Core-core repulsion = 11307.690478 eV Total energy + Delta-G solvation = -2232.711885 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.05334 -36.49296 -33.61159 -30.62332 -28.64809 -27.05640 -25.69633 -24.22121 -21.26194 -20.24574 -18.98311 -16.37035 -15.63048 -15.06138 -14.76781 -14.61842 -14.24843 -13.68170 -12.91830 -12.48960 -12.30377 -11.51513 -11.41073 -11.21724 -10.96840 -10.73484 -10.54991 -10.42126 -10.21539 -9.71721 -9.63461 -9.22013 -8.70311 -8.57406 -8.18620 -7.86267 -5.93388 -3.99747 3.34687 3.38942 3.42986 4.47486 4.85771 5.04144 5.31949 5.56520 5.80404 5.89377 5.97823 6.07632 6.16876 6.26246 6.28843 6.46675 6.53735 6.69378 6.77294 6.95719 7.10019 7.24555 7.31468 7.53154 7.63948 7.83328 7.90511 8.09828 8.38784 8.54778 8.95712 9.64788 11.08137 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.016139 C = 0.010770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.723381 B = 1734.565044 C = 2599.079619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.384 6.384 3 C 0.065 3.935 4 C 0.059 3.941 5 H 0.019 0.981 6 C -0.492 4.492 7 H 0.052 0.948 8 C 0.066 3.934 9 N -0.893 5.893 10 Si 0.888 3.112 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.278 1.278 14 C -0.075 4.075 15 H 0.111 0.889 16 C -0.116 4.116 17 C 0.044 3.956 18 N -0.688 5.688 19 C 0.040 3.960 20 H 0.068 0.932 21 H 0.023 0.977 22 H 0.031 0.969 23 H 0.002 0.998 24 H 0.084 0.916 25 H 0.260 0.740 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.324 0.676 31 H 0.029 0.971 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 1.117 5.057 5.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.302 6.302 3 C -0.011 4.011 4 C 0.040 3.960 5 H 0.038 0.962 6 C -0.530 4.530 7 H 0.071 0.929 8 C -0.134 4.134 9 N -0.533 5.533 10 Si 0.717 3.283 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 C -0.094 4.094 15 H 0.129 0.871 16 C -0.155 4.155 17 C -0.085 4.085 18 N -0.316 5.316 19 C -0.089 4.089 20 H 0.087 0.913 21 H 0.042 0.958 22 H 0.050 0.950 23 H 0.020 0.980 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.138 0.862 31 H 0.048 0.952 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.084 1.585 4.459 4.733 hybrid contribution 0.340 -0.931 -0.389 1.065 sum 0.424 0.654 4.069 4.143 Atomic orbital electron populations 1.22513 0.84212 1.00702 0.98676 1.87884 1.16742 1.30443 1.95156 1.22886 0.96894 0.82505 0.98844 1.18622 0.89524 0.91818 0.96078 0.96209 1.20940 1.34488 1.07194 0.90388 0.92927 1.24864 0.95001 0.94825 0.98746 1.69721 1.40443 1.17367 1.25779 0.86711 0.78996 0.79415 0.83204 1.20376 1.21434 1.20412 1.22305 0.93254 0.99365 0.94482 0.87110 1.22545 0.97889 0.95070 0.99960 1.22636 0.91828 0.97753 0.96276 1.61879 1.08399 1.50646 1.10685 1.23096 0.94219 0.92562 0.98997 0.91334 0.95824 0.95018 0.98010 0.89792 0.92977 0.91137 0.92851 0.91675 0.94485 0.86174 0.95231 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 11.01 101.05 1.11 1.79 16 2 O -0.38 -9.21 10.45 -35.23 -0.37 -9.57 16 3 C 0.06 1.57 5.09 37.15 0.19 1.76 16 4 C 0.06 1.46 1.85 -91.77 -0.17 1.29 16 5 H 0.02 0.49 8.08 -51.93 -0.42 0.07 16 6 C -0.49 -13.34 7.83 -34.44 -0.27 -13.61 16 7 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 8 C 0.07 1.77 5.14 -17.82 -0.09 1.68 16 9 N -0.89 -24.29 9.41 55.43 0.52 -23.77 16 10 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C -0.07 -1.69 2.23 -88.48 -0.20 -1.89 16 15 H 0.11 2.86 6.29 -51.93 -0.33 2.53 16 16 C -0.12 -2.41 5.77 -24.91 -0.14 -2.55 16 17 C 0.04 0.78 7.58 -2.84 -0.02 0.76 16 18 N -0.69 -12.23 7.39 -110.79 -0.82 -13.05 16 19 C 0.04 0.78 6.25 -2.30 -0.01 0.77 16 20 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 21 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.00 0.04 7.29 -51.93 -0.38 -0.34 16 24 H 0.08 2.22 5.95 -51.93 -0.31 1.91 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 26 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.32 4.88 8.91 -39.29 -0.35 4.53 16 31 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 32 H 0.07 1.29 7.97 -51.93 -0.41 0.88 16 LS Contribution 256.36 15.07 3.86 3.86 Total: -1.00 -27.94 256.36 -6.54 -34.48 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.11 Total: 1.79 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 0.39 Total: -10.00 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.30 Total: -36.82 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -0.37 Total: -9.57 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -27.94 -6.54 -34.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.669 kcal (2) G-P(sol) polarization free energy of solvation -27.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds