Wall clock time and date at job start Mon Mar 30 2020 02:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00508 * 2 1 4 4 C 1.52994 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47197 * 305.00019 * 4 3 2 6 6 C 1.50701 * 109.47392 * 65.00011 * 4 3 2 7 7 H 1.08001 * 119.99926 * 240.00793 * 6 4 3 8 8 C 1.37875 * 119.99860 * 59.99655 * 6 4 3 9 9 N 1.31509 * 120.00242 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 119.99620 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47620 * 60.00521 * 10 8 6 12 12 H 1.48509 * 109.47008 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47553 * 300.00017 * 10 8 6 14 14 C 1.53001 * 109.47584 * 185.00248 * 4 3 2 15 15 H 1.09007 * 110.86732 * 303.84674 * 14 4 3 16 16 C 1.55141 * 110.99649 * 179.97438 * 14 4 3 17 17 C 1.54311 * 103.01761 * 206.21559 * 16 14 4 18 18 N 1.47440 * 107.23978 * 22.28190 * 17 16 14 19 19 C 1.47846 * 108.56252 * 0.99041 * 18 17 16 20 20 H 1.08998 * 109.47619 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47129 * 300.00538 * 1 2 3 22 22 H 1.09000 * 109.47012 * 59.99649 * 1 2 3 23 23 H 1.09004 * 109.47411 * 59.99281 * 3 2 1 24 24 H 1.09006 * 109.47217 * 300.00283 * 3 2 1 25 25 H 0.96998 * 120.00537 * 179.97438 * 9 8 6 26 26 H 1.09003 * 110.70280 * 87.82861 * 16 14 4 27 27 H 1.09002 * 110.69976 * 324.59675 * 16 14 4 28 28 H 1.09007 * 109.88857 * 262.87562 * 17 16 14 29 29 H 1.09002 * 109.88684 * 141.69047 * 17 16 14 30 30 H 1.00901 * 111.00072 * 123.25293 * 18 17 16 31 31 H 1.08997 * 110.37447 * 94.73397 * 19 18 17 32 32 H 1.09004 * 110.37450 * 217.07700 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8514 0.5680 0.8409 6 6 3.9883 0.5464 -1.2886 7 1 4.5374 -0.3833 -1.2668 8 6 3.7014 1.1495 -2.4948 9 7 3.0331 2.2818 -2.5214 10 14 4.2622 0.3583 -4.0913 11 1 3.6580 -0.9927 -4.2132 12 1 3.8323 1.1985 -5.2379 13 1 5.7426 0.2404 -4.0922 14 6 4.1576 2.5766 0.1251 15 1 3.8026 3.2337 -0.6689 16 6 5.7068 2.4949 0.1287 17 6 6.1198 3.7607 0.9087 18 7 4.9663 4.1604 1.7354 19 6 3.8733 3.1885 1.5196 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.6886 1.8464 0.8899 24 1 1.6887 1.8463 -0.8900 25 1 2.8315 2.7063 -3.3699 26 1 6.0966 2.5248 -0.8888 27 1 6.0441 1.5965 0.6456 28 1 6.3713 4.5602 0.2117 29 1 6.9751 3.5401 1.5475 30 1 5.2198 4.2086 2.7108 31 1 3.8975 2.4138 2.2859 32 1 2.9084 3.6957 1.5218 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261325359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:04 Heat of formation + Delta-G solvation = -70.621352 kcal Electronic energy + Delta-G solvation = -13541.246818 eV Core-core repulsion = 11307.690478 eV Total energy + Delta-G solvation = -2233.556340 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.73362 -38.21687 -35.50013 -32.53190 -30.22717 -28.70458 -27.50045 -26.04027 -23.08171 -21.79809 -20.78588 -18.27882 -17.37508 -16.90843 -16.43259 -16.28419 -16.08068 -15.36514 -14.63465 -14.06999 -13.90884 -13.36907 -13.06368 -12.97728 -12.80341 -12.50934 -12.31518 -12.19265 -11.95342 -11.48503 -11.42063 -11.12541 -10.61443 -10.51885 -10.10661 -9.29098 -7.98437 -6.10751 1.42269 1.43639 1.50026 2.47542 3.23734 3.26414 3.52893 4.07774 4.17525 4.39935 4.52503 4.54442 4.63295 4.69229 4.78092 4.82045 4.84736 4.97838 5.09084 5.19547 5.27733 5.48667 5.53817 5.68851 5.80440 5.99040 6.12969 6.41155 6.65626 6.71939 6.87220 7.55227 9.00155 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.024626 B = 0.016139 C = 0.010770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.723381 B = 1734.565044 C = 2599.079619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.413 6.413 3 C 0.074 3.926 4 C 0.055 3.945 5 H 0.013 0.987 6 C -0.510 4.510 7 H 0.038 0.962 8 C 0.031 3.969 9 N -0.905 5.905 10 Si 0.938 3.062 11 H -0.281 1.281 12 H -0.284 1.284 13 H -0.273 1.273 14 C -0.075 4.075 15 H 0.078 0.922 16 C -0.115 4.115 17 C 0.052 3.948 18 N -0.689 5.689 19 C 0.050 3.950 20 H 0.095 0.905 21 H 0.046 0.954 22 H 0.027 0.973 23 H 0.019 0.981 24 H 0.058 0.942 25 H 0.259 0.741 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.344 0.656 31 H 0.039 0.961 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 1.319 5.877 6.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.332 6.332 3 C -0.002 4.002 4 C 0.036 3.964 5 H 0.031 0.969 6 C -0.549 4.549 7 H 0.056 0.944 8 C -0.168 4.168 9 N -0.544 5.544 10 Si 0.765 3.235 11 H -0.207 1.207 12 H -0.209 1.209 13 H -0.198 1.198 14 C -0.095 4.095 15 H 0.096 0.904 16 C -0.154 4.154 17 C -0.077 4.077 18 N -0.319 5.319 19 C -0.079 4.079 20 H 0.113 0.887 21 H 0.064 0.936 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.058 0.942 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.309 1.791 5.294 5.598 hybrid contribution 0.221 -1.029 -0.624 1.223 sum 0.530 0.762 4.670 4.761 Atomic orbital electron populations 1.22771 0.81551 1.02812 0.99551 1.87829 1.19775 1.30287 1.95335 1.22667 0.96497 0.82714 0.98329 1.18661 0.90247 0.92781 0.94717 0.96879 1.21098 1.34864 1.06965 0.91933 0.94399 1.25382 0.95170 0.95281 1.00985 1.69853 1.40671 1.17872 1.26040 0.85932 0.78806 0.78425 0.80370 1.20676 1.20950 1.19837 1.22094 0.94411 0.97558 0.95428 0.90370 1.22488 0.96560 0.96884 0.99449 1.22572 0.92713 0.95979 0.96467 1.61791 1.08011 1.49835 1.12246 1.22893 0.94877 0.92956 0.97135 0.88705 0.93577 0.95402 0.96273 0.92352 0.93183 0.93180 0.92807 0.91653 0.91320 0.83936 0.94232 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 11.01 113.37 1.25 2.31 16 2 O -0.41 -19.63 10.45 -148.98 -1.56 -21.18 16 3 C 0.07 3.60 5.09 71.98 0.37 3.96 16 4 C 0.06 2.75 1.85 -11.54 -0.02 2.73 16 5 H 0.01 0.64 8.08 -2.39 -0.02 0.62 16 6 C -0.51 -28.07 7.83 25.60 0.20 -27.87 16 7 H 0.04 2.13 7.81 -2.91 -0.02 2.11 16 8 C 0.03 1.66 5.14 84.66 0.43 2.10 16 9 N -0.90 -49.82 9.41 21.45 0.20 -49.61 16 10 Si 0.94 43.83 29.54 68.60 2.03 45.85 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 C -0.08 -3.40 2.23 -9.41 -0.02 -3.42 16 15 H 0.08 4.09 6.29 -2.38 -0.01 4.08 16 16 C -0.12 -4.70 5.77 31.77 0.18 -4.52 16 17 C 0.05 1.70 7.58 86.64 0.66 2.36 16 18 N -0.69 -22.72 7.39 -504.44 -3.73 -26.44 16 19 C 0.05 1.89 6.25 86.77 0.54 2.43 16 20 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 21 H 0.05 1.43 8.14 -2.38 -0.02 1.42 16 22 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.02 0.84 7.29 -2.38 -0.02 0.83 16 24 H 0.06 3.13 5.95 -2.38 -0.01 3.12 16 25 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 26 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 28 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.34 9.17 8.91 -89.69 -0.80 8.37 16 31 H 0.04 1.41 7.99 -2.39 -0.02 1.39 16 32 H 0.06 2.43 7.97 -2.39 -0.02 2.41 16 Total: -1.00 -59.12 256.36 0.82 -58.30 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.29 Total: 13.00 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.59 Total: -19.92 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -3.53 Total: -76.06 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.56 Total: -21.18 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -59.12 0.82 -58.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.318 kcal (2) G-P(sol) polarization free energy of solvation -59.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds