Wall clock time and date at job start Mon Mar 30 2020 01:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46997 * 2 1 4 4 C 1.50700 * 109.46734 * 119.99161 * 2 1 3 5 5 H 1.08006 * 119.99666 * 94.52941 * 4 2 1 6 6 C 1.37879 * 120.00107 * 274.51915 * 4 2 1 7 7 N 1.31507 * 120.00090 * 6.40442 * 6 4 2 8 8 Si 1.86805 * 119.99887 * 186.39764 * 6 4 2 9 9 H 1.48503 * 109.47073 * 270.00530 * 8 6 4 10 10 H 1.48499 * 109.47058 * 30.00497 * 8 6 4 11 11 H 1.48499 * 109.47109 * 149.99998 * 8 6 4 12 12 N 1.46893 * 109.47590 * 239.99713 * 2 1 3 13 13 C 1.48532 * 111.00292 * 177.39906 * 12 2 1 14 14 C 1.54936 * 103.22943 * 200.27825 * 13 12 2 15 15 C 1.54606 * 102.92127 * 37.40813 * 14 13 12 16 16 C 1.52996 * 110.30780 * 219.12641 * 15 14 13 17 17 O 1.42897 * 110.39040 * 97.00168 * 15 14 13 18 18 C 1.47903 * 111.00117 * 59.99624 * 12 2 1 19 19 H 1.09002 * 109.46619 * 54.20918 * 1 2 3 20 20 H 1.09000 * 109.47039 * 174.20533 * 1 2 3 21 21 H 1.08991 * 109.47102 * 294.20929 * 1 2 3 22 22 H 0.97000 * 120.00328 * 355.07193 * 7 6 4 23 23 H 1.09001 * 110.66593 * 318.71142 * 13 12 2 24 24 H 1.08992 * 110.67116 * 81.83733 * 13 12 2 25 25 H 1.08997 * 110.72349 * 279.05811 * 14 13 12 26 26 H 1.08994 * 110.88069 * 155.83931 * 14 13 12 27 27 H 1.09003 * 109.46673 * 175.71228 * 16 15 14 28 28 H 1.08993 * 109.47864 * 295.71602 * 16 15 14 29 29 H 1.08998 * 109.47050 * 55.72353 * 16 15 14 30 30 H 0.96704 * 113.99685 * 64.23595 * 17 15 14 31 31 H 1.08994 * 109.91959 * 265.19579 * 18 12 2 32 32 H 1.09002 * 109.91329 * 26.29573 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7102 1.2306 5 1 2.2819 -1.7600 1.1841 6 6 2.1733 -0.0199 2.4157 7 7 1.7525 1.2227 2.5070 8 14 2.9620 -0.8497 3.8918 9 1 1.9141 -1.5257 4.6982 10 1 3.9519 -1.8535 3.4251 11 1 3.6472 0.1704 4.7257 12 7 2.0198 -0.6925 -1.1993 13 6 3.5032 -0.6580 -1.2655 14 6 3.7978 -0.9286 -2.7623 15 6 2.6605 -0.1672 -3.4816 16 6 2.1575 -0.9732 -4.6807 17 8 3.1135 1.1202 -3.9051 18 6 1.5456 -0.0220 -2.4294 19 1 -0.3632 0.6010 -0.8336 20 1 -0.3633 -1.0224 -0.1038 21 1 -0.3633 0.4214 0.9372 22 1 1.4086 1.6772 1.7221 23 1 3.8788 0.3218 -0.9705 24 1 3.9345 -1.4403 -0.6410 25 1 3.7448 -1.9955 -2.9791 26 1 4.7705 -0.5266 -3.0457 27 1 1.3072 -0.4613 -5.1316 28 1 2.9564 -1.0676 -5.4161 29 1 1.8501 -1.9649 -4.3488 30 1 3.8166 1.0912 -4.5684 31 1 0.6340 -0.5015 -2.7858 32 1 1.3560 1.0323 -2.2279 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300011618.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:07 Heat of formation + Delta-G solvation = -81.184263 kcal Electronic energy + Delta-G solvation = -13497.122776 eV Core-core repulsion = 11263.108393 eV Total energy + Delta-G solvation = -2234.014383 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.60946 -37.60128 -35.30220 -32.90104 -31.17857 -29.45414 -27.45859 -26.08192 -23.21876 -22.09132 -20.93862 -19.00479 -17.52443 -16.99952 -16.50085 -15.65020 -15.42715 -15.01905 -14.57917 -14.19851 -13.84351 -13.65140 -13.30446 -13.10224 -12.71062 -12.65345 -12.44839 -12.36599 -12.08786 -11.95268 -11.93869 -11.52951 -10.88107 -10.74269 -10.39802 -9.27145 -8.63830 -6.34814 1.51538 1.60855 1.78525 2.54589 3.02873 3.19793 3.42441 3.67589 3.75931 3.93071 4.33646 4.44507 4.46498 4.58964 4.69437 4.70008 4.79594 4.81033 4.93507 5.02337 5.06514 5.09737 5.16286 5.27852 5.39500 5.87346 5.95190 6.26736 6.43723 6.64890 6.90044 7.46320 8.73683 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053238 B = 0.009829 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.812603 B = 2848.022636 C = 3034.649842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.188 3.812 3 H -0.037 1.037 4 C -0.587 4.587 5 H 0.050 0.950 6 C -0.034 4.034 7 N -0.938 5.938 8 Si 1.119 2.881 9 H -0.273 1.273 10 H -0.270 1.270 11 H -0.285 1.285 12 N -0.511 5.511 13 C 0.053 3.947 14 C -0.136 4.136 15 C 0.119 3.881 16 C -0.157 4.157 17 O -0.578 6.578 18 C 0.041 3.959 19 H 0.035 0.965 20 H 0.053 0.947 21 H 0.029 0.971 22 H 0.254 0.746 23 H 0.006 0.994 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.393 0.607 31 H 0.090 0.910 32 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -4.992 -12.848 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 H -0.019 1.019 4 C -0.626 4.626 5 H 0.068 0.932 6 C -0.232 4.232 7 N -0.576 5.576 8 Si 0.941 3.059 9 H -0.198 1.198 10 H -0.194 1.194 11 H -0.211 1.211 12 N -0.236 5.236 13 C -0.075 4.075 14 C -0.174 4.174 15 C 0.078 3.922 16 C -0.215 4.215 17 O -0.387 6.387 18 C -0.087 4.087 19 H 0.054 0.946 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.025 0.975 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.243 0.757 31 H 0.108 0.892 32 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.325 -5.115 -10.812 12.414 hybrid contribution 0.039 0.974 -1.651 1.917 sum 3.364 -4.141 -12.462 13.556 Atomic orbital electron populations 1.21701 0.97170 1.00196 0.98532 1.19490 0.92718 0.90457 0.89349 1.01905 1.22092 1.46992 0.97480 0.95998 0.93177 1.27322 0.95219 0.96136 1.04522 1.70889 1.41293 1.13538 1.31891 0.82911 0.76290 0.74581 0.72146 1.19846 1.19449 1.21062 1.64881 1.07484 1.49960 1.01268 1.22879 0.88902 0.98423 0.97316 1.23224 0.98854 1.02105 0.93237 1.22059 0.92934 0.83133 0.94087 1.22314 1.02468 1.00177 0.96509 1.86569 1.59295 1.29234 1.63648 1.22929 0.98284 0.96563 0.90935 0.94563 0.92836 0.95147 0.93559 0.97536 0.91281 0.88532 0.88928 0.91806 0.89709 0.90865 0.75697 0.89202 0.96322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.84 71.98 0.64 -5.16 16 2 C 0.19 10.07 1.36 44.17 0.06 10.13 16 3 H -0.04 -2.23 6.81 -2.38 -0.02 -2.25 16 4 C -0.59 -33.88 7.71 25.60 0.20 -33.68 16 5 H 0.05 2.90 7.82 -2.91 -0.02 2.88 16 6 C -0.03 -2.01 5.45 84.66 0.46 -1.55 16 7 N -0.94 -58.85 13.63 21.45 0.29 -58.56 16 8 Si 1.12 51.29 29.91 68.60 2.05 53.34 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 N -0.51 -23.14 5.10 -862.25 -4.40 -27.54 16 13 C 0.05 2.21 5.85 86.65 0.51 2.71 16 14 C -0.14 -3.96 6.35 31.80 0.20 -3.76 16 15 C 0.12 3.47 1.38 -9.91 -0.01 3.46 16 16 C -0.16 -3.29 8.55 71.98 0.62 -2.67 16 17 O -0.58 -16.81 12.96 -148.98 -1.93 -18.74 16 18 C 0.04 1.58 4.99 86.45 0.43 2.02 16 19 H 0.04 1.59 7.25 -2.39 -0.02 1.57 16 20 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 21 H 0.03 1.58 7.86 -2.39 -0.02 1.57 16 22 H 0.25 16.31 6.41 -92.71 -0.59 15.72 16 23 H 0.01 0.30 7.96 -2.39 -0.02 0.28 16 24 H 0.07 2.96 8.02 -2.39 -0.02 2.94 16 25 H 0.10 2.46 7.84 -2.39 -0.02 2.44 16 26 H 0.09 2.24 8.08 -2.39 -0.02 2.23 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 30 H 0.39 7.05 9.08 -74.05 -0.67 6.38 16 31 H 0.09 3.15 7.68 -2.39 -0.02 3.13 16 32 H 0.02 0.81 7.32 -2.39 -0.02 0.80 16 Total: -1.00 -69.55 258.06 -0.30 -69.85 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.59 Total: 10.15 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 3.10 Total: -28.51 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -4.10 Total: -86.10 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -1.93 Total: -18.74 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 2.05 Total: 53.34 kcal Total: -69.55 -0.30 -69.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300011618.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.334 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds