Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99696 * 2 1 4 4 H 1.08992 * 110.27811 * 332.08729 * 3 2 1 5 5 C 1.54601 * 110.38945 * 94.23759 * 3 2 1 6 6 C 1.54941 * 102.92044 * 140.91600 * 5 3 2 7 7 N 1.48528 * 103.22615 * 322.58091 * 6 5 3 8 8 C 1.46905 * 111.00215 * 159.72336 * 7 6 5 9 9 H 1.09000 * 109.46843 * 297.60714 * 8 7 6 10 10 C 1.52995 * 109.47359 * 177.60557 * 8 7 6 11 11 C 1.50700 * 109.46884 * 57.60233 * 8 7 6 12 12 H 1.07995 * 120.00146 * 5.36784 * 11 8 7 13 13 C 1.37877 * 119.99929 * 185.36522 * 11 8 7 14 14 N 1.31516 * 119.99666 * 5.41607 * 13 11 8 15 15 Si 1.86797 * 119.99984 * 185.13786 * 13 11 8 16 16 H 1.48497 * 109.47078 * 85.00333 * 15 13 11 17 17 H 1.48497 * 109.46993 * 205.00167 * 15 13 11 18 18 H 1.48497 * 109.47076 * 324.99932 * 15 13 11 19 19 C 1.47909 * 105.82219 * 39.20981 * 7 6 5 20 20 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47090 * 299.99616 * 1 2 3 22 22 H 1.09000 * 109.46729 * 60.00073 * 1 2 3 23 23 H 1.09000 * 110.71951 * 259.26877 * 5 3 2 24 24 H 1.08998 * 110.72612 * 22.37393 * 5 3 2 25 25 H 1.08997 * 110.66281 * 204.14822 * 6 5 3 26 26 H 1.08996 * 110.66648 * 81.01570 * 6 5 3 27 27 H 1.09003 * 109.47231 * 55.01601 * 10 8 7 28 28 H 1.09005 * 109.47270 * 175.01336 * 10 8 7 29 29 H 1.09002 * 109.47313 * 295.01369 * 10 8 7 30 30 H 0.97002 * 119.99463 * 179.72676 * 14 13 11 31 31 H 1.09002 * 109.91703 * 94.02138 * 19 7 6 32 32 H 1.08999 * 109.91927 * 215.11758 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3385 2.0180 -0.4786 5 6 2.3271 1.7540 1.4452 6 6 3.6848 2.4845 1.2914 7 7 4.3952 1.6703 0.2722 8 6 5.4759 2.4409 -0.3573 9 1 5.0535 3.2994 -0.8794 10 6 6.2208 1.5527 -1.3558 11 6 6.4348 2.9193 0.7023 12 1 6.3081 2.6039 1.7273 13 6 7.4739 3.7596 0.3630 14 7 7.5668 4.2290 -0.8621 15 14 8.7453 4.2377 1.6453 16 1 9.7992 3.1937 1.7106 17 1 9.3588 5.5378 1.2733 18 1 8.0884 4.3618 2.9713 19 6 3.3702 1.2850 -0.7221 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.5614 2.4367 1.8137 24 1 2.4225 0.8914 2.1046 25 1 4.2315 2.4828 2.2344 26 1 3.5352 3.5032 0.9340 27 1 5.5115 1.1354 -2.0706 28 1 6.9644 2.1472 -1.8868 29 1 6.7174 0.7426 -0.8216 30 1 8.2956 4.8233 -1.0997 31 1 3.3643 1.9995 -1.5453 32 1 3.5779 0.2843 -1.1008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300037846.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = -43.084993 kcal Electronic energy + Delta-G solvation = -13252.896052 eV Core-core repulsion = 11020.533778 eV Total energy + Delta-G solvation = -2232.362274 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.83923 -36.54938 -33.36849 -30.94371 -28.38981 -27.48576 -26.09160 -24.83903 -21.59101 -20.43474 -19.29648 -16.76877 -16.15239 -15.68162 -14.78668 -14.54535 -13.81795 -13.74618 -13.10612 -12.54684 -12.07782 -12.03101 -11.58660 -11.33208 -11.08919 -10.92367 -10.83599 -10.60818 -10.34505 -10.11595 -10.02482 -9.77543 -9.33421 -8.83328 -8.43497 -7.23575 -6.01550 -4.03422 3.33078 3.38791 3.41829 3.98489 4.43441 4.92444 5.12265 5.26483 5.32901 5.37789 5.43239 5.55217 5.65266 5.87900 6.09783 6.18283 6.25656 6.44544 6.67116 6.69041 6.83513 7.05832 7.09360 7.43620 7.48363 7.63438 7.85249 8.08934 8.29323 8.58481 9.03895 9.61181 11.07892 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066545 B = 0.008538 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.669130 B = 3278.787713 C = 3535.263586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.078 3.922 4 H 0.059 0.941 5 C -0.148 4.148 6 C 0.056 3.944 7 N -0.510 5.510 8 C 0.202 3.798 9 H 0.006 0.994 10 C -0.125 4.125 11 C -0.505 4.505 12 H 0.062 0.938 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.275 1.275 19 C 0.040 3.960 20 H 0.081 0.919 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.011 0.989 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.260 0.740 31 H 0.043 0.957 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 -3.865 1.346 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.298 6.298 3 C 0.020 3.980 4 H 0.077 0.923 5 C -0.186 4.186 6 C -0.072 4.072 7 N -0.236 5.236 8 C 0.095 3.905 9 H 0.024 0.976 10 C -0.183 4.183 11 C -0.543 4.543 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.200 1.200 19 C -0.089 4.089 20 H 0.099 0.901 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.402 -4.360 1.450 11.371 hybrid contribution 0.188 1.304 0.185 1.330 sum -10.214 -3.057 1.635 10.786 Atomic orbital electron populations 1.22723 0.82092 1.02186 0.99552 1.87980 1.18731 1.28126 1.94952 1.23124 0.94986 0.83696 0.96199 0.92252 1.23071 0.98072 1.00676 0.96776 1.22874 0.91651 0.94747 0.97928 1.64878 1.07658 1.39996 1.11018 1.19466 0.88151 0.89753 0.93101 0.97616 1.21713 0.99674 0.99192 0.97737 1.21094 1.10913 1.27694 0.94637 0.91963 1.24943 0.97997 0.95733 0.95491 1.69951 1.32000 1.33045 1.18334 0.86551 0.81760 0.77616 0.81697 1.20541 1.21422 1.19982 1.22867 0.89609 1.01638 0.94791 0.90071 0.94402 0.94444 0.92039 0.90257 0.90151 0.94262 0.97018 0.91330 0.94335 0.92987 0.93854 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.45 16 2 O -0.38 -6.09 10.30 -35.23 -0.36 -6.45 16 3 C 0.08 1.29 3.47 -25.37 -0.09 1.20 16 4 H 0.06 0.87 7.81 -51.93 -0.41 0.47 16 5 C -0.15 -2.42 6.81 -24.87 -0.17 -2.59 16 6 C 0.06 1.13 5.69 -1.90 -0.01 1.12 16 7 N -0.51 -11.51 5.10 -223.88 -1.14 -12.66 16 8 C 0.20 5.22 1.64 -68.86 -0.11 5.11 16 9 H 0.01 0.18 7.94 -51.93 -0.41 -0.24 16 10 C -0.12 -3.11 9.03 37.16 0.34 -2.78 16 11 C -0.50 -14.05 7.92 -34.44 -0.27 -14.33 16 12 H 0.06 1.73 7.00 -52.49 -0.37 1.37 16 13 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 14 N -0.89 -25.90 12.00 55.43 0.66 -25.24 16 15 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.04 0.77 5.31 -2.75 -0.01 0.76 16 20 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.04 0.38 8.10 -51.93 -0.42 -0.04 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 25 H 0.08 1.66 7.42 -51.93 -0.39 1.28 16 26 H 0.04 0.82 8.02 -51.93 -0.42 0.40 16 27 H 0.01 0.25 7.16 -51.93 -0.37 -0.13 16 28 H 0.07 1.83 6.85 -51.93 -0.36 1.47 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 31 H 0.04 0.85 7.65 -51.93 -0.40 0.45 16 32 H 0.08 1.57 7.92 -51.93 -0.41 1.16 16 LS Contribution 259.09 15.07 3.90 3.90 Total: -1.00 -29.55 259.09 -6.48 -36.03 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.19 Total: -3.63 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 0.67 Total: -8.48 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.48 Total: -37.89 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.36 Total: -6.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.55 -6.48 -36.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300037846.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.057 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds