Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99696 * 2 1 4 4 H 1.08992 * 110.27811 * 332.08729 * 3 2 1 5 5 C 1.54601 * 110.38945 * 94.23759 * 3 2 1 6 6 C 1.54941 * 102.92044 * 140.91600 * 5 3 2 7 7 N 1.48528 * 103.22615 * 322.58091 * 6 5 3 8 8 C 1.46905 * 111.00215 * 159.72336 * 7 6 5 9 9 H 1.09000 * 109.46843 * 297.60714 * 8 7 6 10 10 C 1.52995 * 109.47359 * 177.60557 * 8 7 6 11 11 C 1.50700 * 109.46884 * 57.60233 * 8 7 6 12 12 H 1.07995 * 120.00146 * 5.36784 * 11 8 7 13 13 C 1.37877 * 119.99929 * 185.36522 * 11 8 7 14 14 N 1.31516 * 119.99666 * 5.41607 * 13 11 8 15 15 Si 1.86797 * 119.99984 * 185.13786 * 13 11 8 16 16 H 1.48497 * 109.47078 * 85.00333 * 15 13 11 17 17 H 1.48497 * 109.46993 * 205.00167 * 15 13 11 18 18 H 1.48497 * 109.47076 * 324.99932 * 15 13 11 19 19 C 1.47909 * 105.82219 * 39.20981 * 7 6 5 20 20 H 1.08999 * 109.46824 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47090 * 299.99616 * 1 2 3 22 22 H 1.09000 * 109.46729 * 60.00073 * 1 2 3 23 23 H 1.09000 * 110.71951 * 259.26877 * 5 3 2 24 24 H 1.08998 * 110.72612 * 22.37393 * 5 3 2 25 25 H 1.08997 * 110.66281 * 204.14822 * 6 5 3 26 26 H 1.08996 * 110.66648 * 81.01570 * 6 5 3 27 27 H 1.09003 * 109.47231 * 55.01601 * 10 8 7 28 28 H 1.09005 * 109.47270 * 175.01336 * 10 8 7 29 29 H 1.09002 * 109.47313 * 295.01369 * 10 8 7 30 30 H 0.97002 * 119.99463 * 179.72676 * 14 13 11 31 31 H 1.09002 * 109.91703 * 94.02138 * 19 7 6 32 32 H 1.08999 * 109.91927 * 215.11758 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3385 2.0180 -0.4786 5 6 2.3271 1.7540 1.4452 6 6 3.6848 2.4845 1.2914 7 7 4.3952 1.6703 0.2722 8 6 5.4759 2.4409 -0.3573 9 1 5.0535 3.2994 -0.8794 10 6 6.2208 1.5527 -1.3558 11 6 6.4348 2.9193 0.7023 12 1 6.3081 2.6039 1.7273 13 6 7.4739 3.7596 0.3630 14 7 7.5668 4.2290 -0.8621 15 14 8.7453 4.2377 1.6453 16 1 9.7992 3.1937 1.7106 17 1 9.3588 5.5378 1.2733 18 1 8.0884 4.3618 2.9713 19 6 3.3702 1.2850 -0.7221 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.5614 2.4367 1.8137 24 1 2.4225 0.8914 2.1046 25 1 4.2315 2.4828 2.2344 26 1 3.5352 3.5032 0.9340 27 1 5.5115 1.1354 -2.0706 28 1 6.9644 2.1472 -1.8868 29 1 6.7174 0.7426 -0.8216 30 1 8.2956 4.8233 -1.0997 31 1 3.3643 1.9995 -1.5453 32 1 3.5779 0.2843 -1.1008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300037846.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = -63.838763 kcal Electronic energy + Delta-G solvation = -13253.796003 eV Core-core repulsion = 11020.533778 eV Total energy + Delta-G solvation = -2233.262225 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.29106 -37.99019 -35.29355 -32.81598 -29.86166 -29.20247 -27.38026 -26.69521 -23.33318 -21.91196 -21.06288 -18.51418 -17.69437 -17.35920 -16.30001 -15.91592 -15.36207 -15.28742 -14.84061 -14.35508 -13.65679 -13.49307 -13.26351 -12.93057 -12.78816 -12.62022 -12.42933 -12.34537 -12.08100 -11.96131 -11.71350 -11.49392 -10.93048 -10.57113 -10.47647 -9.05470 -8.15372 -6.24704 1.41744 1.43636 1.52755 2.41847 2.85809 3.15890 3.37194 3.74673 3.83181 4.15593 4.43083 4.52825 4.59618 4.64605 4.71399 4.81580 4.87603 4.91858 4.92889 4.98069 5.01221 5.17217 5.23667 5.41294 5.67165 5.70580 6.12761 6.31077 6.34055 6.63244 6.89782 7.44304 8.93729 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066545 B = 0.008538 C = 0.007918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.669130 B = 3278.787713 C = 3535.263586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.087 3.913 4 H 0.082 0.918 5 C -0.133 4.133 6 C 0.052 3.948 7 N -0.524 5.524 8 C 0.207 3.793 9 H -0.027 1.027 10 C -0.114 4.114 11 C -0.521 4.521 12 H 0.057 0.943 13 C 0.012 3.988 14 N -0.923 5.923 15 Si 0.960 3.040 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.268 1.268 19 C 0.036 3.964 20 H 0.098 0.902 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.262 0.738 31 H 0.038 0.962 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.102 -4.219 2.220 13.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.029 3.971 4 H 0.100 0.900 5 C -0.171 4.171 6 C -0.076 4.076 7 N -0.249 5.249 8 C 0.100 3.900 9 H -0.010 1.010 10 C -0.172 4.172 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.187 4.187 14 N -0.563 5.563 15 Si 0.786 3.214 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.093 4.093 20 H 0.117 0.883 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.638 -4.728 2.331 12.776 hybrid contribution 0.494 1.372 -0.114 1.463 sum -11.144 -3.356 2.217 11.847 Atomic orbital electron populations 1.22997 0.79540 1.03872 1.00849 1.87942 1.21485 1.27543 1.95059 1.22947 0.93701 0.84773 0.95702 0.89961 1.22990 0.96383 1.00758 0.96994 1.22889 0.93621 0.94482 0.96565 1.64770 1.08492 1.39611 1.12056 1.19259 0.88972 0.89106 0.92695 1.00975 1.21549 0.99434 0.98442 0.97782 1.21348 1.11725 1.28065 0.94827 0.92521 1.25735 0.99814 0.95652 0.97461 1.70068 1.32646 1.33507 1.20047 0.85532 0.79136 0.77387 0.79364 1.20057 1.20862 1.19221 1.22886 0.90998 1.00937 0.94442 0.88334 0.93034 0.93152 0.88763 0.90314 0.91291 0.95419 0.94931 0.93572 0.94772 0.92861 0.94422 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.85 113.37 1.23 1.68 16 2 O -0.40 -11.81 10.30 -148.98 -1.53 -13.35 16 3 C 0.09 2.67 3.47 31.48 0.11 2.78 16 4 H 0.08 2.16 7.81 -2.39 -0.02 2.14 16 5 C -0.13 -4.05 6.81 31.80 0.22 -3.83 16 6 C 0.05 2.09 5.69 86.65 0.49 2.59 16 7 N -0.52 -23.73 5.10 -862.23 -4.40 -28.13 16 8 C 0.21 10.94 1.64 44.17 0.07 11.01 16 9 H -0.03 -1.59 7.94 -2.39 -0.02 -1.61 16 10 C -0.11 -5.77 9.03 71.98 0.65 -5.12 16 11 C -0.52 -29.45 7.92 25.60 0.20 -29.25 16 12 H 0.06 3.19 7.00 -2.91 -0.02 3.17 16 13 C 0.01 0.69 5.28 84.65 0.45 1.13 16 14 N -0.92 -54.28 12.00 21.45 0.26 -54.03 16 15 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 C 0.04 1.37 5.31 86.45 0.46 1.83 16 20 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 23 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 25 H 0.07 2.86 7.42 -2.39 -0.02 2.84 16 26 H 0.03 1.15 8.02 -2.39 -0.02 1.13 16 27 H 0.03 1.45 7.16 -2.39 -0.02 1.44 16 28 H 0.05 2.51 6.85 -2.38 -0.02 2.50 16 29 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 31 H 0.04 1.48 7.65 -2.39 -0.02 1.46 16 32 H 0.07 2.91 7.92 -2.39 -0.02 2.89 16 Total: -1.00 -63.25 259.09 1.30 -61.95 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.07 Total: 4.41 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 3.88 Total: -17.18 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -4.14 Total: -82.16 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.53 Total: -13.35 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.25 1.30 -61.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300037846.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.886 kcal (2) G-P(sol) polarization free energy of solvation -63.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds