Wall clock time and date at job start Mon Mar 30 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.50706 * 109.47011 * 240.00069 * 2 1 3 5 5 H 1.08004 * 119.99710 * 239.99761 * 4 2 1 6 6 C 1.37875 * 119.99843 * 60.00115 * 4 2 1 7 7 N 1.31509 * 120.00465 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46823 * 89.99677 * 8 6 4 10 10 H 1.48495 * 109.47180 * 210.00050 * 8 6 4 11 11 H 1.48500 * 109.46688 * 330.00160 * 8 6 4 12 12 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 13 13 C 1.46906 * 110.99573 * 274.99770 * 12 2 1 14 14 H 1.09005 * 110.43459 * 325.69839 * 13 12 2 15 15 C 1.54886 * 110.48478 * 88.24296 * 13 12 2 16 16 C 1.55033 * 102.68348 * 156.51737 * 15 13 12 17 17 C 1.54272 * 104.27797 * 322.23125 * 16 15 13 18 18 C 1.53870 * 106.59703 * 23.51961 * 17 16 15 19 19 H 1.09002 * 110.07341 * 119.30517 * 18 17 16 20 20 O 1.42909 * 110.03240 * 240.71247 * 18 17 16 21 21 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 22 22 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 24 24 H 0.96994 * 120.00796 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00219 * 38.95409 * 12 2 1 26 26 H 1.09000 * 110.75638 * 274.93469 * 15 13 12 27 27 H 1.08992 * 110.75795 * 38.30459 * 15 13 12 28 28 H 1.08997 * 110.52131 * 203.48831 * 16 15 13 29 29 H 1.08995 * 110.48149 * 80.95221 * 16 15 13 30 30 H 1.08991 * 110.03350 * 264.23377 * 17 16 15 31 31 H 1.09002 * 110.02716 * 142.80335 * 17 16 15 32 32 H 0.96693 * 113.99448 * 297.16833 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0081 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 2.3520 1.2264 2.0187 15 6 0.7284 0.2430 3.0986 16 6 1.1350 0.7104 4.5197 17 6 2.4895 0.0176 4.7751 18 6 3.0919 -0.2926 3.3936 19 1 4.0457 0.2221 3.2772 20 8 3.2752 -1.7020 3.2447 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7095 1.1619 -3.4844 25 1 1.4496 -1.4980 1.4099 26 1 0.0415 0.9530 2.6379 27 1 0.2898 -0.7542 3.1318 28 1 0.3970 0.3875 5.2539 29 1 1.2497 1.7940 4.5465 30 1 2.3370 -0.9067 5.3320 31 1 3.1507 0.6835 5.3298 32 1 3.8996 -2.0861 3.8753 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306185609.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:58 Heat of formation + Delta-G solvation = -57.967401 kcal Electronic energy + Delta-G solvation = -13300.460170 eV Core-core repulsion = 11067.452546 eV Total energy + Delta-G solvation = -2233.007624 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.69363 -35.38441 -34.09478 -31.99453 -28.63374 -27.45230 -25.44567 -24.84141 -20.50849 -20.12257 -19.66883 -16.88237 -16.33272 -15.26864 -14.71768 -14.52148 -13.76652 -13.15024 -12.89833 -12.53480 -12.16628 -11.94494 -11.43555 -11.11344 -10.94001 -10.79785 -10.66034 -10.50309 -10.35091 -10.18960 -10.03561 -9.68016 -9.47814 -8.80735 -8.27903 -6.99917 -5.90271 -3.92587 3.37991 3.43733 3.49491 4.50189 4.66378 4.84867 4.89662 5.19826 5.40980 5.53563 5.63158 5.73114 5.86328 5.87049 6.03993 6.17938 6.21644 6.32841 6.54304 6.66147 6.83187 6.98862 7.21059 7.47310 7.84811 7.98334 8.11762 8.41137 8.72659 8.78852 9.16112 9.72551 11.16747 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057524 B = 0.008931 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.640194 B = 3134.437455 C = 3460.650738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.209 3.791 3 H 0.030 0.970 4 C -0.491 4.491 5 H 0.062 0.938 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.661 5.661 13 C 0.094 3.906 14 H 0.083 0.917 15 C -0.153 4.153 16 C -0.121 4.121 17 C -0.158 4.158 18 C 0.108 3.892 19 H 0.051 0.949 20 O -0.542 6.542 21 H 0.086 0.914 22 H 0.025 0.975 23 H 0.011 0.989 24 H 0.258 0.742 25 H 0.332 0.668 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.425 -0.453 12.572 12.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.101 3.899 3 H 0.048 0.952 4 C -0.529 4.529 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.290 5.290 13 C -0.018 4.018 14 H 0.101 0.899 15 C -0.192 4.192 16 C -0.159 4.159 17 C -0.196 4.196 18 C 0.048 3.952 19 H 0.069 0.931 20 O -0.344 6.344 21 H 0.104 0.896 22 H 0.044 0.956 23 H 0.029 0.971 24 H 0.068 0.932 25 H 0.150 0.850 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.601 -0.175 11.741 11.851 hybrid contribution -0.346 -0.284 -0.121 0.463 sum 1.256 -0.458 11.620 11.696 Atomic orbital electron populations 1.22553 1.00847 0.99117 1.00590 1.19258 0.89576 0.94140 0.86893 0.95195 1.21212 1.29792 1.12279 0.89667 0.91959 1.24953 0.95483 0.95256 0.98993 1.69885 1.37679 1.23294 1.23156 0.86522 0.79257 0.79216 0.82533 1.20914 1.21466 1.19904 1.60545 1.58024 1.08119 1.02296 1.22458 0.91705 0.96738 0.90869 0.89937 1.23412 0.99280 1.01364 0.95151 1.22255 0.96308 0.99756 0.97560 1.22966 0.97579 1.00837 0.98258 1.22525 0.97503 0.82143 0.93035 0.93147 1.86721 1.66662 1.21127 1.59892 0.89575 0.95553 0.97059 0.93219 0.84980 0.91329 0.91526 0.92263 0.91893 0.91315 0.92019 0.79511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.75 37.16 0.32 -3.91 16 2 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16 3 H 0.03 0.85 7.45 -51.93 -0.39 0.46 16 4 C -0.49 -14.10 8.84 -34.44 -0.30 -14.41 16 5 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.36 11.32 55.43 0.63 -25.73 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 N -0.66 -14.89 5.35 -99.21 -0.53 -15.42 16 13 C 0.09 1.75 3.10 -66.05 -0.20 1.54 16 14 H 0.08 1.60 7.47 -51.93 -0.39 1.21 16 15 C -0.15 -2.47 5.43 -24.66 -0.13 -2.61 16 16 C -0.12 -1.56 6.83 -24.99 -0.17 -1.73 16 17 C -0.16 -1.96 6.61 -25.61 -0.17 -2.13 16 18 C 0.11 1.67 4.20 -25.62 -0.11 1.57 16 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 20 O -0.54 -8.72 12.36 -35.23 -0.44 -9.16 16 21 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 22 H 0.03 0.63 8.13 -51.93 -0.42 0.20 16 23 H 0.01 0.23 5.60 -51.93 -0.29 -0.06 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.33 7.45 7.90 -39.29 -0.31 7.14 16 26 H 0.07 1.15 6.59 -51.93 -0.34 0.81 16 27 H 0.07 1.12 7.81 -51.93 -0.41 0.71 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.80 7.95 -51.93 -0.41 0.39 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.36 4.00 9.11 45.56 0.42 4.41 16 LS Contribution 254.31 15.07 3.83 3.83 Total: -1.00 -30.40 254.31 -6.66 -37.06 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.09 Total: 7.31 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.04 Total: -15.00 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.10 Total: -41.15 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.44 Total: -9.16 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.40 -6.66 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306185609.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.910 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds