Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47524 * 2 1 4 4 C 1.50706 * 109.47011 * 240.00069 * 2 1 3 5 5 H 1.08004 * 119.99710 * 239.99761 * 4 2 1 6 6 C 1.37875 * 119.99843 * 60.00115 * 4 2 1 7 7 N 1.31509 * 120.00465 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99940 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46823 * 89.99677 * 8 6 4 10 10 H 1.48495 * 109.47180 * 210.00050 * 8 6 4 11 11 H 1.48500 * 109.46688 * 330.00160 * 8 6 4 12 12 N 1.46902 * 109.47083 * 120.00512 * 2 1 3 13 13 C 1.46906 * 110.99573 * 274.99770 * 12 2 1 14 14 H 1.09005 * 110.43459 * 325.69839 * 13 12 2 15 15 C 1.54886 * 110.48478 * 88.24296 * 13 12 2 16 16 C 1.55033 * 102.68348 * 156.51737 * 15 13 12 17 17 C 1.54272 * 104.27797 * 322.23125 * 16 15 13 18 18 C 1.53870 * 106.59703 * 23.51961 * 17 16 15 19 19 H 1.09002 * 110.07341 * 119.30517 * 18 17 16 20 20 O 1.42909 * 110.03240 * 240.71247 * 18 17 16 21 21 H 1.09004 * 109.46766 * 59.99858 * 1 2 3 22 22 H 1.09003 * 109.46954 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47023 * 299.99973 * 1 2 3 24 24 H 0.96994 * 120.00796 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00219 * 38.95409 * 12 2 1 26 26 H 1.09000 * 110.75638 * 274.93469 * 15 13 12 27 27 H 1.08992 * 110.75795 * 38.30459 * 15 13 12 28 28 H 1.08997 * 110.52131 * 203.48831 * 16 15 13 29 29 H 1.08995 * 110.48149 * 80.95221 * 16 15 13 30 30 H 1.08991 * 110.03350 * 264.23377 * 17 16 15 31 31 H 1.09002 * 110.02716 * 142.80335 * 17 16 15 32 32 H 0.96693 * 113.99448 * 297.16833 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3225 -1.1195 -4.0081 9 1 1.3448 -2.1615 -4.4124 10 1 2.4872 -0.1402 -5.1121 11 1 3.6308 -1.7565 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 1 2.3520 1.2264 2.0187 15 6 0.7284 0.2430 3.0986 16 6 1.1350 0.7104 4.5197 17 6 2.4895 0.0176 4.7751 18 6 3.0919 -0.2926 3.3936 19 1 4.0457 0.2221 3.2772 20 8 3.2752 -1.7020 3.2447 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 0.7095 1.1619 -3.4844 25 1 1.4496 -1.4980 1.4099 26 1 0.0415 0.9530 2.6379 27 1 0.2898 -0.7542 3.1318 28 1 0.3970 0.3875 5.2539 29 1 1.2497 1.7940 4.5465 30 1 2.3370 -0.9067 5.3320 31 1 3.1507 0.6835 5.3298 32 1 3.8996 -2.0861 3.8753 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306185609.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -80.794914 kcal Electronic energy + Delta-G solvation = -13301.450045 eV Core-core repulsion = 11067.452546 eV Total energy + Delta-G solvation = -2233.997499 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.01982 -37.08989 -35.50970 -33.94569 -30.41564 -28.66795 -27.24717 -26.71941 -22.22066 -21.58898 -21.02576 -18.39327 -18.11242 -16.89258 -16.55869 -15.79998 -15.18499 -14.75772 -14.52098 -14.30272 -13.71170 -13.28490 -13.23822 -12.91645 -12.76280 -12.49159 -12.19314 -12.15282 -11.92253 -11.77313 -11.61125 -11.42504 -10.82601 -10.64114 -10.47109 -8.77115 -8.08501 -6.19617 1.42121 1.42536 1.54363 2.44620 3.18675 3.43456 3.63101 3.73802 3.99957 4.18230 4.44390 4.48345 4.63098 4.69161 4.80453 4.83583 4.94935 5.05025 5.12534 5.15010 5.21020 5.30438 5.45347 5.46413 5.70956 5.85509 6.30798 6.72834 6.87092 6.99760 7.19634 7.50749 8.96739 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.057524 B = 0.008931 C = 0.008089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.640194 B = 3134.437455 C = 3460.650738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.215 3.785 3 H -0.002 1.002 4 C -0.516 4.516 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.668 5.668 13 C 0.080 3.920 14 H 0.065 0.935 15 C -0.148 4.148 16 C -0.114 4.114 17 C -0.146 4.146 18 C 0.110 3.890 19 H 0.052 0.948 20 O -0.566 6.566 21 H 0.058 0.942 22 H 0.025 0.975 23 H 0.034 0.966 24 H 0.261 0.739 25 H 0.331 0.669 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.720 -0.894 13.853 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.554 4.554 5 H 0.068 0.932 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.296 5.296 13 C -0.032 4.032 14 H 0.084 0.916 15 C -0.188 4.188 16 C -0.152 4.152 17 C -0.184 4.184 18 C 0.050 3.950 19 H 0.070 0.930 20 O -0.372 6.372 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.070 0.930 25 H 0.149 0.851 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.907 -0.618 13.056 13.209 hybrid contribution -0.418 -0.134 -0.489 0.657 sum 1.489 -0.752 12.567 12.677 Atomic orbital electron populations 1.22346 0.99999 0.98903 1.00351 1.19010 0.90109 0.92325 0.87899 0.98380 1.21488 1.30265 1.12333 0.91338 0.93196 1.25733 0.95537 0.95938 1.01878 1.70007 1.38177 1.24231 1.23924 0.85510 0.78738 0.78249 0.78816 1.20067 1.20722 1.19698 1.60437 1.57729 1.08648 1.02795 1.22628 0.94534 0.95396 0.90602 0.91630 1.23272 0.97438 1.00867 0.97186 1.22255 0.97115 1.00473 0.95402 1.22873 0.97238 1.01948 0.96301 1.22446 0.96827 0.82017 0.93668 0.92972 1.86650 1.67726 1.21384 1.61396 0.92287 0.95582 0.94702 0.93024 0.85089 0.92517 0.92103 0.90293 0.90918 0.89995 0.89539 0.76932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 8.75 71.98 0.63 -7.22 16 2 C 0.22 11.48 2.57 44.17 0.11 11.59 16 3 H 0.00 -0.10 7.45 -2.39 -0.02 -0.12 16 4 C -0.52 -30.23 8.84 25.60 0.23 -30.01 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.40 5.30 84.65 0.45 0.85 16 7 N -0.92 -54.83 11.32 21.45 0.24 -54.59 16 8 Si 0.96 45.61 29.54 68.60 2.03 47.64 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.67 -30.47 5.35 -467.80 -2.50 -32.97 16 13 C 0.08 2.94 3.10 45.99 0.14 3.08 16 14 H 0.07 2.60 7.47 -2.38 -0.02 2.58 16 15 C -0.15 -4.63 5.43 31.93 0.17 -4.46 16 16 C -0.11 -2.62 6.83 31.72 0.22 -2.40 16 17 C -0.15 -3.09 6.61 31.32 0.21 -2.89 16 18 C 0.11 3.23 4.20 31.32 0.13 3.36 16 19 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 20 O -0.57 -17.29 12.36 -148.98 -1.84 -19.14 16 21 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 22 H 0.03 1.25 8.13 -2.39 -0.02 1.23 16 23 H 0.03 1.53 5.60 -2.39 -0.01 1.51 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.33 14.99 7.90 -89.70 -0.71 14.28 16 26 H 0.06 1.87 6.59 -2.39 -0.02 1.85 16 27 H 0.06 1.97 7.81 -2.39 -0.02 1.95 16 28 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.57 7.95 -2.39 -0.02 1.55 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 32 H 0.38 7.62 9.11 -74.06 -0.67 6.95 16 Total: -1.00 -65.45 254.31 -0.06 -65.51 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.27 Total: 21.64 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 2.29 Total: -28.10 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -2.26 Total: -87.56 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.84 Total: -19.14 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -65.45 -0.06 -65.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306185609.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.284 kcal (2) G-P(sol) polarization free energy of solvation -65.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds