Wall clock time and date at job start Mon Mar 30 2020 02:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36944 * 120.00155 * 95.11022 * 3 2 1 5 5 H 1.07991 * 119.99953 * 210.45554 * 4 3 2 6 6 C 1.38812 * 119.99733 * 30.45958 * 4 3 2 7 7 N 1.31619 * 120.00261 * 30.92045 * 6 4 3 8 8 Si 1.86796 * 119.99818 * 210.92451 * 6 4 3 9 9 H 1.48500 * 109.47446 * 269.99788 * 8 6 4 10 10 H 1.48504 * 109.47052 * 30.00093 * 8 6 4 11 11 H 1.48498 * 109.47230 * 149.99617 * 8 6 4 12 12 C 1.46498 * 120.00237 * 275.10581 * 3 2 1 13 13 H 1.09000 * 110.45606 * 2.61228 * 12 3 2 14 14 C 1.54509 * 110.51078 * 125.35890 * 12 3 2 15 15 C 1.54480 * 104.06099 * 118.64895 * 14 12 3 16 16 O 1.44425 * 104.80698 * 336.02221 * 15 14 12 17 17 C 1.44424 * 105.27222 * 40.51169 * 16 15 14 18 18 H 1.08993 * 110.46815 * 78.36746 * 17 16 15 19 19 C 1.52999 * 110.37028 * 200.66187 * 17 16 15 20 20 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 21 21 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 23 23 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 24 24 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 25 25 H 0.96998 * 120.00018 * 3.77475 * 7 6 4 26 26 H 1.08994 * 110.51383 * 237.29109 * 14 12 3 27 27 H 1.08997 * 110.51507 * 0.02562 * 14 12 3 28 28 H 1.09009 * 110.37096 * 217.18956 * 15 14 12 29 29 H 1.08997 * 110.47102 * 94.90229 * 15 14 12 30 30 H 1.09008 * 109.46844 * 175.38172 * 19 17 16 31 31 H 1.09004 * 109.47156 * 295.37716 * 19 17 16 32 32 H 1.08998 * 109.47308 * 55.38266 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3460 1.9917 1.1812 5 1 2.2289 3.0599 1.2877 6 6 2.8289 1.2372 2.2417 7 7 3.5312 0.1487 2.0090 8 14 2.4817 1.7668 3.9990 9 1 3.5664 2.6657 4.4687 10 1 1.1842 2.4872 4.0518 11 1 2.4183 0.5685 4.8738 12 6 2.1559 2.1095 -1.2636 13 1 1.8107 1.4965 -2.0962 14 6 1.3752 3.4418 -1.2085 15 6 2.4627 4.5222 -1.3999 16 8 3.6890 3.8917 -0.9705 17 6 3.6226 2.5427 -1.4819 18 1 3.8695 2.5249 -2.5434 19 6 4.5694 1.6296 -0.7004 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7581 -0.0967 1.0984 26 1 0.6435 3.4894 -2.0149 27 1 0.8872 3.5588 -0.2409 28 1 2.2462 5.3925 -0.7802 29 1 2.5319 4.8118 -2.4484 30 1 4.4478 0.6018 -1.0427 31 1 5.5989 1.9478 -0.8647 32 1 4.3360 1.6886 0.3626 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306333596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:37 Heat of formation + Delta-G solvation = -22.662181 kcal Electronic energy + Delta-G solvation = -14078.846947 eV Core-core repulsion = 11847.370273 eV Total energy + Delta-G solvation = -2231.476675 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.96019 -35.62388 -31.67722 -30.86985 -30.42899 -27.94063 -24.98442 -23.69213 -21.27486 -20.96529 -19.29994 -17.11226 -15.71047 -14.95342 -14.67935 -14.04141 -13.61013 -13.50184 -13.17789 -12.31260 -12.06926 -11.47682 -11.34550 -11.14093 -10.95568 -10.72452 -10.41623 -10.33693 -10.15803 -10.03518 -9.98377 -9.78737 -9.27453 -8.96988 -8.12590 -6.76652 -6.01746 -3.19222 3.55125 3.58057 3.73271 4.62202 4.69984 5.16321 5.36904 5.55283 5.68498 5.72992 5.89391 6.06559 6.13825 6.19833 6.27811 6.37863 6.40825 6.50304 6.62390 6.68472 6.79746 6.86514 6.91996 7.10686 7.35210 7.59247 7.85327 8.19101 8.65491 9.17209 9.89266 10.31495 11.21778 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030521 B = 0.016350 C = 0.014333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.178965 B = 1712.142853 C = 1953.023584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 N -0.581 5.581 4 C -0.333 4.333 5 H 0.059 0.941 6 C -0.023 4.023 7 N -0.908 5.908 8 Si 1.058 2.942 9 H -0.295 1.295 10 H -0.294 1.294 11 H -0.288 1.288 12 C 0.147 3.853 13 H 0.059 0.941 14 C -0.166 4.166 15 C 0.050 3.950 16 O -0.366 6.366 17 C 0.063 3.937 18 H 0.039 0.961 19 C -0.142 4.142 20 H 0.033 0.967 21 H 0.035 0.965 22 H 0.052 0.948 23 H 0.022 0.978 24 H 0.086 0.914 25 H 0.272 0.728 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 2.897 -6.045 7.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.001 3.999 3 N -0.301 5.301 4 C -0.462 4.462 5 H 0.076 0.924 6 C -0.225 4.225 7 N -0.549 5.549 8 Si 0.888 3.112 9 H -0.223 1.223 10 H -0.221 1.221 11 H -0.214 1.214 12 C 0.038 3.962 13 H 0.077 0.923 14 C -0.205 4.205 15 C -0.028 4.028 16 O -0.285 6.285 17 C 0.003 3.997 18 H 0.057 0.943 19 C -0.199 4.199 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.040 0.960 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.009 2.552 -4.294 5.832 hybrid contribution -0.435 0.499 -1.918 2.029 sum -3.444 3.051 -6.212 7.730 Atomic orbital electron populations 1.22252 1.00071 0.98868 1.00712 1.21022 0.91356 0.86690 1.00793 1.44034 1.73655 1.11186 1.01267 1.19718 1.42021 0.94320 0.90170 0.92369 1.25668 0.95348 0.97974 1.03514 1.70788 1.31295 1.28800 1.24017 0.83640 0.75877 0.75402 0.76268 1.22268 1.22070 1.21395 1.21731 0.92289 0.92466 0.89744 0.92309 1.23341 0.98103 0.96649 1.02430 1.23168 0.85561 0.96354 0.97700 1.89121 1.37906 1.24899 1.76546 1.23422 0.98385 0.83057 0.94791 0.94278 1.21868 0.95453 0.96183 1.06432 0.94744 0.94609 0.92906 0.95989 0.89610 0.91587 0.92568 0.89620 0.90472 0.94087 0.93276 0.95285 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.23 37.16 0.38 -2.77 16 2 C 0.13 2.87 5.45 -4.04 -0.02 2.85 16 3 N -0.58 -13.74 1.48 -163.88 -0.24 -13.98 16 4 C -0.33 -8.82 6.31 -15.06 -0.10 -8.91 16 5 H 0.06 1.63 7.09 -52.49 -0.37 1.26 16 6 C -0.02 -0.62 4.28 -17.43 -0.07 -0.70 16 7 N -0.91 -25.84 11.77 55.49 0.65 -25.19 16 8 Si 1.06 25.17 30.02 -169.99 -5.10 20.07 16 9 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.15 3.06 3.51 -66.36 -0.23 2.82 16 13 H 0.06 1.14 7.94 -51.93 -0.41 0.72 16 14 C -0.17 -3.12 6.38 -25.16 -0.16 -3.28 16 15 C 0.05 0.90 7.63 37.93 0.29 1.19 16 16 O -0.37 -8.09 11.21 -35.23 -0.40 -8.48 16 17 C 0.06 1.33 3.63 -25.95 -0.09 1.24 16 18 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 19 C -0.14 -3.24 8.23 37.16 0.31 -2.93 16 20 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 24 H 0.09 2.19 5.29 -51.93 -0.27 1.92 16 25 H 0.27 7.67 5.77 -40.82 -0.24 7.44 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 1.80 6.87 -51.93 -0.36 1.44 16 28 H 0.08 1.30 8.14 -51.92 -0.42 0.87 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 1.08 8.10 -51.92 -0.42 0.66 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.12 3.17 3.81 -51.93 -0.20 2.97 16 LS Contribution 249.52 15.07 3.76 3.76 Total: -1.00 -28.23 249.52 -5.90 -34.13 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.87 Total: 0.17 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 0.30 Total: -10.49 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.41 Total: -39.17 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.40 Total: -8.48 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.10 Total: 20.07 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.23 -5.90 -34.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306333596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.467 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds