Wall clock time and date at job start Mon Mar 30 2020 02:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46639 * 2 1 4 4 C 1.36944 * 120.00155 * 95.11022 * 3 2 1 5 5 H 1.07991 * 119.99953 * 210.45554 * 4 3 2 6 6 C 1.38812 * 119.99733 * 30.45958 * 4 3 2 7 7 N 1.31619 * 120.00261 * 30.92045 * 6 4 3 8 8 Si 1.86796 * 119.99818 * 210.92451 * 6 4 3 9 9 H 1.48500 * 109.47446 * 269.99788 * 8 6 4 10 10 H 1.48504 * 109.47052 * 30.00093 * 8 6 4 11 11 H 1.48498 * 109.47230 * 149.99617 * 8 6 4 12 12 C 1.46498 * 120.00237 * 275.10581 * 3 2 1 13 13 H 1.09000 * 110.45606 * 2.61228 * 12 3 2 14 14 C 1.54509 * 110.51078 * 125.35890 * 12 3 2 15 15 C 1.54480 * 104.06099 * 118.64895 * 14 12 3 16 16 O 1.44425 * 104.80698 * 336.02221 * 15 14 12 17 17 C 1.44424 * 105.27222 * 40.51169 * 16 15 14 18 18 H 1.08993 * 110.46815 * 78.36746 * 17 16 15 19 19 C 1.52999 * 110.37028 * 200.66187 * 17 16 15 20 20 H 1.08999 * 109.47381 * 59.99918 * 1 2 3 21 21 H 1.09007 * 109.46974 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47277 * 299.99564 * 1 2 3 23 23 H 1.08995 * 109.47494 * 240.00482 * 2 1 3 24 24 H 1.09004 * 109.47350 * 119.99579 * 2 1 3 25 25 H 0.96998 * 120.00018 * 3.77475 * 7 6 4 26 26 H 1.08994 * 110.51383 * 237.29109 * 14 12 3 27 27 H 1.08997 * 110.51507 * 0.02562 * 14 12 3 28 28 H 1.09009 * 110.37096 * 217.18956 * 15 14 12 29 29 H 1.08997 * 110.47102 * 94.90229 * 15 14 12 30 30 H 1.09008 * 109.46844 * 175.38172 * 19 17 16 31 31 H 1.09004 * 109.47156 * 295.37716 * 19 17 16 32 32 H 1.08998 * 109.47308 * 55.38266 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3460 1.9917 1.1812 5 1 2.2289 3.0599 1.2877 6 6 2.8289 1.2372 2.2417 7 7 3.5312 0.1487 2.0090 8 14 2.4817 1.7668 3.9990 9 1 3.5664 2.6657 4.4687 10 1 1.1842 2.4872 4.0518 11 1 2.4183 0.5685 4.8738 12 6 2.1559 2.1095 -1.2636 13 1 1.8107 1.4965 -2.0962 14 6 1.3752 3.4418 -1.2085 15 6 2.4627 4.5222 -1.3999 16 8 3.6890 3.8917 -0.9705 17 6 3.6226 2.5427 -1.4819 18 1 3.8695 2.5249 -2.5434 19 6 4.5694 1.6296 -0.7004 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.7581 -0.0967 1.0984 26 1 0.6435 3.4894 -2.0149 27 1 0.8872 3.5588 -0.2409 28 1 2.2462 5.3925 -0.7802 29 1 2.5319 4.8118 -2.4484 30 1 4.4478 0.6018 -1.0427 31 1 5.5989 1.9478 -0.8647 32 1 4.3360 1.6886 0.3626 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306333596.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:37 Heat of formation + Delta-G solvation = -39.372752 kcal Electronic energy + Delta-G solvation = -14079.571572 eV Core-core repulsion = 11847.370273 eV Total energy + Delta-G solvation = -2232.201299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.59372 -37.41990 -33.57187 -32.55785 -32.05739 -29.71805 -26.74542 -25.50374 -22.93591 -22.59329 -21.07895 -19.01242 -17.34294 -16.64385 -16.26718 -15.80286 -15.46511 -15.31104 -14.84182 -14.05155 -13.71401 -13.21076 -13.01537 -12.94464 -12.69187 -12.47144 -12.13125 -11.98192 -11.90822 -11.81813 -11.71510 -11.48384 -11.17281 -10.55513 -10.12801 -8.70130 -8.07077 -5.23360 1.61079 1.66504 1.83585 2.71004 3.16089 3.28030 3.51228 3.99672 4.13979 4.29373 4.32519 4.42059 4.53769 4.67640 4.72254 4.77446 4.82904 4.87113 5.02341 5.03894 5.11431 5.17680 5.36181 5.40650 5.58893 5.81937 6.09391 6.19446 6.58990 7.23633 7.93311 8.34150 9.13887 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.030521 B = 0.016350 C = 0.014333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.178965 B = 1712.142853 C = 1953.023584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.126 3.874 3 N -0.591 5.591 4 C -0.317 4.317 5 H 0.039 0.961 6 C -0.069 4.069 7 N -0.934 5.934 8 Si 1.095 2.905 9 H -0.293 1.293 10 H -0.283 1.283 11 H -0.292 1.292 12 C 0.137 3.863 13 H 0.080 0.920 14 C -0.157 4.157 15 C 0.047 3.953 16 O -0.397 6.397 17 C 0.062 3.938 18 H 0.069 0.931 19 C -0.137 4.137 20 H 0.050 0.950 21 H 0.058 0.942 22 H 0.033 0.967 23 H 0.034 0.966 24 H 0.053 0.947 25 H 0.264 0.736 26 H 0.090 0.910 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.409 3.572 -7.543 9.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.000 4.000 3 N -0.312 5.312 4 C -0.447 4.447 5 H 0.057 0.943 6 C -0.267 4.267 7 N -0.576 5.576 8 Si 0.923 3.077 9 H -0.221 1.221 10 H -0.209 1.209 11 H -0.218 1.218 12 C 0.029 3.971 13 H 0.098 0.902 14 C -0.197 4.197 15 C -0.029 4.029 16 O -0.317 6.317 17 C 0.003 3.997 18 H 0.087 0.913 19 C -0.195 4.195 20 H 0.069 0.931 21 H 0.077 0.923 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.044 3.243 -5.815 7.790 hybrid contribution -0.118 0.316 -1.537 1.574 sum -4.162 3.559 -7.352 9.167 Atomic orbital electron populations 1.22080 0.97662 1.00333 1.00480 1.20999 0.93179 0.86033 0.99789 1.44139 1.73874 1.11542 1.01632 1.19604 1.40260 0.93386 0.91424 0.94310 1.26537 0.95698 0.98293 1.06144 1.70852 1.33254 1.30045 1.23480 0.83105 0.76148 0.74965 0.73447 1.22085 1.20898 1.21824 1.21990 0.92713 0.93444 0.88984 0.90199 1.23251 0.98613 0.95581 1.02234 1.23396 0.83703 0.96026 0.99819 1.89086 1.39847 1.25351 1.77442 1.23453 0.97887 0.82515 0.95839 0.91336 1.21733 0.96507 0.96908 1.04310 0.93138 0.92326 0.94814 0.94785 0.92872 0.92487 0.89150 0.92383 0.89731 0.90687 0.93335 0.94661 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 10.23 71.98 0.74 -4.75 16 2 C 0.13 5.58 5.45 86.38 0.47 6.05 16 3 N -0.59 -27.50 1.48 -672.41 -0.99 -28.49 16 4 C -0.32 -16.85 6.31 84.03 0.53 -16.32 16 5 H 0.04 2.20 7.09 -2.92 -0.02 2.18 16 6 C -0.07 -3.81 4.28 84.86 0.36 -3.45 16 7 N -0.93 -54.29 11.77 21.65 0.25 -54.04 16 8 Si 1.10 51.61 30.02 68.60 2.06 53.67 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 12 C 0.14 5.37 3.51 46.01 0.16 5.53 16 13 H 0.08 2.79 7.94 -2.39 -0.02 2.77 16 14 C -0.16 -5.47 6.38 31.61 0.20 -5.27 16 15 C 0.05 1.56 7.63 72.49 0.55 2.12 16 16 O -0.40 -16.89 11.21 -148.98 -1.67 -18.56 16 17 C 0.06 2.50 3.63 31.10 0.11 2.61 16 18 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 19 C -0.14 -6.19 8.23 71.98 0.59 -5.60 16 20 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 22 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.03 1.40 8.07 -2.39 -0.02 1.38 16 24 H 0.05 2.75 5.29 -2.39 -0.01 2.73 16 25 H 0.26 15.29 5.77 -92.71 -0.54 14.76 16 26 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.06 2.34 6.87 -2.39 -0.02 2.33 16 28 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.05 2.12 8.10 -2.38 -0.02 2.10 16 31 H 0.03 1.47 8.14 -2.38 -0.02 1.46 16 32 H 0.08 4.41 3.81 -2.39 -0.01 4.41 16 Total: -1.00 -60.68 249.52 4.68 -55.99 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 1.31 Total: 10.51 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 3.72 Total: -19.08 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -0.74 Total: -82.53 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.67 Total: -18.56 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.06 Total: 53.67 kcal Total: -60.68 4.68 -55.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306333596.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.620 kcal (2) G-P(sol) polarization free energy of solvation -60.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds