Wall clock time and date at job start Mon Mar 30 2020 02:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31744 * 123.76476 * 2 1 4 4 N 1.27574 * 118.27083 * 179.97438 * 3 2 1 5 5 S 1.56507 * 109.22389 * 359.97438 * 4 3 2 6 6 C 1.35337 * 123.76734 * 179.97438 * 2 1 3 7 7 C 1.50703 * 127.92364 * 359.97438 * 6 2 1 8 8 H 1.08996 * 109.46888 * 15.00510 * 7 6 2 9 9 O 1.42907 * 109.46666 * 135.00032 * 7 6 2 10 10 C 1.50696 * 109.47143 * 254.99980 * 7 6 2 11 11 H 1.07999 * 120.00451 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99710 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00115 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99813 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.46856 * 90.00405 * 14 12 10 16 16 H 1.48506 * 109.47118 * 210.00101 * 14 12 10 17 17 H 1.48498 * 109.47150 * 330.00230 * 14 12 10 18 18 H 1.08995 * 109.47038 * 90.02306 * 1 2 3 19 19 H 1.09001 * 109.46588 * 210.03168 * 1 2 3 20 20 H 1.09006 * 109.46674 * 330.02393 * 1 2 3 21 21 H 0.96704 * 113.99636 * 60.00410 * 9 7 6 22 22 H 0.96994 * 120.00221 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2393 1.0952 0.0000 4 7 3.5091 0.9731 0.0005 5 16 3.8806 -0.5473 0.0017 6 6 2.2593 -1.1251 0.0005 7 6 1.7859 -2.5558 0.0017 8 1 0.7293 -2.5891 -0.2640 9 8 2.5404 -3.3079 -0.9508 10 6 1.9777 -3.1473 1.3744 11 1 2.3998 -2.5471 2.1669 12 6 1.6133 -4.4544 1.6189 13 7 1.0989 -5.1851 0.6540 14 14 1.8504 -5.1874 3.3206 15 1 0.6295 -4.9561 4.1336 16 1 2.0963 -6.6470 3.2011 17 1 3.0139 -4.5418 3.9800 18 1 -0.3633 -0.0004 -1.0276 19 1 -0.3632 -0.8897 0.5143 20 1 -0.3633 0.8903 0.5135 21 1 3.4915 -3.3219 -0.7764 22 1 0.8429 -6.1047 0.8258 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306610987.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:53 Heat of formation + Delta-G solvation = -13.095044 kcal Electronic energy + Delta-G solvation = -10753.423280 eV Core-core repulsion = 8628.022239 eV Total energy + Delta-G solvation = -2125.401041 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.036 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.79823 -37.97500 -34.36558 -34.21691 -30.30803 -28.12525 -27.34043 -24.42044 -21.32604 -19.53797 -19.05572 -17.17564 -16.74836 -16.68779 -15.58049 -15.07760 -14.67468 -13.86631 -13.83348 -13.34588 -13.27367 -13.09192 -12.81470 -12.33834 -12.15050 -11.67816 -11.10778 -10.83283 -10.61654 -10.51396 -10.16976 -8.20600 -6.48572 -0.64199 0.26778 0.83041 1.27065 1.42747 1.45597 1.54641 2.37615 3.06005 3.19999 3.89306 4.07986 4.23383 4.55075 4.73618 4.84075 5.21422 5.38070 5.59069 5.87364 6.58593 6.81073 7.19430 7.35337 8.82938 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.045279 B = 0.011946 C = 0.011569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.241984 B = 2343.269202 C = 2419.674315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.006 4.006 3 N -0.261 5.261 4 N -0.337 5.337 5 S 0.457 5.543 6 C -0.250 4.250 7 C 0.307 3.693 8 H 0.065 0.935 9 O -0.568 6.568 10 C -0.581 4.581 11 H 0.057 0.943 12 C 0.041 3.959 13 N -0.888 5.888 14 Si 0.958 3.042 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.266 1.266 18 H 0.090 0.910 19 H 0.079 0.921 20 H 0.091 0.909 21 H 0.360 0.640 22 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 4.604 0.223 5.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.150 4.150 3 N -0.128 5.128 4 N -0.315 5.315 5 S 0.593 5.407 6 C -0.388 4.388 7 C 0.246 3.754 8 H 0.083 0.917 9 O -0.372 6.372 10 C -0.619 4.619 11 H 0.075 0.925 12 C -0.164 4.164 13 N -0.524 5.524 14 Si 0.783 3.217 15 H -0.199 1.199 16 H -0.206 1.206 17 H -0.191 1.191 18 H 0.109 0.891 19 H 0.098 0.902 20 H 0.110 0.890 21 H 0.206 0.794 22 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.044 5.490 -0.113 6.278 hybrid contribution -0.894 -0.963 1.032 1.671 sum 2.150 4.526 0.919 5.095 Atomic orbital electron populations 1.20312 0.83610 1.04259 1.04153 1.22551 1.01533 0.86260 1.04632 1.71118 0.97233 1.28626 1.15830 1.78524 1.10519 1.16743 1.25749 1.80827 1.09231 0.99176 1.51488 1.28632 1.00041 1.04874 1.05294 1.17670 0.91849 0.77199 0.88640 0.91743 1.86613 1.21786 1.75314 1.53442 1.21720 1.46018 0.97993 0.96163 0.92501 1.25748 0.93103 0.97193 1.00359 1.70151 1.39687 1.08978 1.33542 0.85570 0.78920 0.77618 0.79623 1.19891 1.20558 1.19051 0.89149 0.90249 0.88995 0.79408 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.98 9.97 71.24 0.71 -1.27 14 2 C -0.01 -0.21 6.89 41.90 0.29 0.07 14 3 N -0.26 -10.27 11.68 -51.25 -0.60 -10.87 14 4 N -0.34 -12.83 12.54 37.02 0.46 -12.36 14 5 S 0.46 15.86 23.06 -56.49 -1.30 14.56 14 6 C -0.25 -10.16 5.49 25.02 0.14 -10.02 14 7 C 0.31 14.40 3.11 29.10 0.09 14.49 14 8 H 0.07 3.27 7.14 -2.39 -0.02 3.26 14 9 O -0.57 -26.92 12.72 -148.98 -1.89 -28.81 14 10 C -0.58 -29.16 8.75 25.60 0.22 -28.94 14 11 H 0.06 2.83 7.74 -2.91 -0.02 2.81 14 12 C 0.04 2.08 5.40 84.66 0.46 2.54 14 13 N -0.89 -48.39 12.84 21.45 0.28 -48.11 14 14 Si 0.96 40.16 29.54 68.60 2.03 42.19 14 15 H -0.27 -11.25 7.11 99.48 0.71 -10.54 14 16 H -0.28 -11.56 7.11 99.48 0.71 -10.86 14 17 H -0.27 -10.84 7.11 99.48 0.71 -10.14 14 18 H 0.09 2.51 8.14 -2.39 -0.02 2.49 14 19 H 0.08 2.61 7.34 -2.39 -0.02 2.59 14 20 H 0.09 2.48 8.14 -2.38 -0.02 2.46 14 21 H 0.36 14.73 8.72 -74.05 -0.65 14.08 14 22 H 0.27 13.79 8.31 -92.71 -0.77 13.02 14 Total: -1.00 -58.85 218.83 1.49 -57.36 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.61 Total: 9.17 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 1.91 Total: -23.12 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: 0.14 Total: -71.34 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.89 Total: -28.81 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: 15.86 SS G_CDS: -1.30 Total: 14.56 kcal Total: -58.85 1.49 -57.36 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610987.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.264 kcal (2) G-P(sol) polarization free energy of solvation -58.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds