Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46722 * 2 1 4 4 O 1.42899 * 109.47226 * 239.99851 * 2 1 3 5 5 C 1.52992 * 109.46632 * 119.99389 * 2 1 3 6 6 N 1.46903 * 109.46906 * 185.00138 * 5 2 1 7 7 C 1.47848 * 110.99969 * 69.15848 * 6 5 2 8 8 C 1.54913 * 104.79684 * 146.36377 * 7 6 5 9 9 C 1.55133 * 101.65243 * 322.93112 * 8 7 6 10 10 H 1.09005 * 110.85852 * 277.19964 * 9 8 7 11 11 C 1.50698 * 110.70738 * 154.03694 * 9 8 7 12 12 H 1.08005 * 119.99819 * 246.40233 * 11 9 8 13 13 C 1.37875 * 120.00046 * 66.39574 * 11 9 8 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 C 1.47445 * 111.00338 * 190.00037 * 6 5 2 20 20 H 1.09005 * 109.47293 * 60.00518 * 1 2 3 21 21 H 1.09002 * 109.47109 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47768 * 300.00275 * 1 2 3 23 23 H 0.96694 * 113.99883 * 59.99866 * 4 2 1 24 24 H 1.09002 * 109.47304 * 65.00429 * 5 2 1 25 25 H 1.08998 * 109.47680 * 305.00202 * 5 2 1 26 26 H 1.09000 * 110.37558 * 265.19294 * 7 6 5 27 27 H 1.08997 * 110.37231 * 27.53433 * 7 6 5 28 28 H 1.08996 * 110.98774 * 204.83802 * 8 7 6 29 29 H 1.08994 * 110.98886 * 81.02350 * 8 7 6 30 30 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 31 31 H 1.08996 * 109.88644 * 117.33707 * 19 6 5 32 32 H 1.09003 * 110.01926 * 356.22634 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2493 6 7 3.5039 -0.6174 1.3112 7 6 3.9254 0.7719 1.5904 8 6 5.2095 0.6316 2.4455 9 6 4.8698 -0.6034 3.3207 10 1 4.2703 -0.3142 4.1840 11 6 6.1276 -1.3076 3.7598 12 1 6.3435 -2.3025 3.3991 13 6 7.0029 -0.6818 4.6219 14 7 6.7399 0.5294 5.0615 15 14 8.5625 -1.5545 5.1656 16 1 9.3270 -0.6746 6.0858 17 1 9.3940 -1.8692 3.9762 18 1 8.2062 -2.8137 5.8676 19 6 4.0518 -1.4944 2.3623 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.7210 -0.2702 -1.9979 24 1 1.7515 -1.7714 1.2057 25 1 1.6052 -0.2616 2.1370 26 1 4.1443 1.2963 0.6603 27 1 3.1521 1.2977 2.1505 28 1 5.3663 1.5163 3.0625 29 1 6.0781 0.4373 1.8164 30 1 5.9302 0.9827 4.7788 31 1 4.6984 -2.2495 1.9154 32 1 3.2399 -1.9768 2.9065 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306760937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -60.213895 kcal Electronic energy + Delta-G solvation = -13136.687454 eV Core-core repulsion = 10903.582415 eV Total energy + Delta-G solvation = -2233.105039 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.60502 -36.79999 -33.47000 -31.54001 -29.47362 -28.29190 -25.39064 -23.70085 -21.40317 -19.86483 -19.76886 -17.18904 -16.86730 -15.56848 -14.82782 -14.22826 -13.71970 -13.65876 -13.12722 -12.62531 -12.56354 -12.16100 -12.02138 -11.57160 -11.28066 -10.93204 -10.78891 -10.54022 -10.26348 -10.07794 -9.86302 -9.72425 -9.53913 -8.46710 -8.32288 -7.59991 -6.31660 -4.02803 3.46450 3.48261 3.66693 4.35728 4.49595 4.57592 4.99496 5.21693 5.26651 5.39087 5.55184 5.65705 5.78229 5.83318 5.96124 5.99282 6.10899 6.20466 6.24403 6.43505 6.74659 6.96762 7.00525 7.27745 7.45557 7.72025 7.80753 7.87295 8.26482 8.46375 8.90768 9.68725 11.06561 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.081170 B = 0.007488 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.873897 B = 3738.550060 C = 3827.218746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.106 3.894 3 H 0.052 0.948 4 O -0.550 6.550 5 C 0.058 3.942 6 N -0.523 5.523 7 C 0.039 3.961 8 C -0.119 4.119 9 C 0.018 3.982 10 H 0.020 0.980 11 C -0.589 4.589 12 H 0.051 0.949 13 C 0.019 3.981 14 N -0.914 5.914 15 Si 1.068 2.932 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.289 1.289 19 C 0.055 3.945 20 H 0.057 0.943 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.366 0.634 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.062 0.938 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.270 0.730 31 H 0.071 0.929 32 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 0.522 -8.224 12.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.047 3.953 3 H 0.070 0.930 4 O -0.354 6.354 5 C -0.071 4.071 6 N -0.247 5.247 7 C -0.089 4.089 8 C -0.158 4.158 9 C -0.001 4.001 10 H 0.038 0.962 11 C -0.627 4.627 12 H 0.069 0.931 13 C -0.185 4.185 14 N -0.550 5.550 15 Si 0.897 3.103 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.215 1.215 19 C -0.072 4.072 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.211 0.789 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.167 0.132 -7.303 10.956 hybrid contribution -2.127 0.500 -0.580 2.261 sum -10.294 0.632 -7.883 12.981 Atomic orbital electron populations 1.22517 0.96975 1.02677 1.02172 1.21791 0.91463 0.95490 0.86563 0.92989 1.86690 1.76914 1.56702 1.15069 1.22274 0.89889 1.00723 0.94242 1.63568 1.07437 1.06865 1.46840 1.23114 0.97790 0.89555 0.98401 1.22864 0.95281 1.00045 0.97560 1.19979 0.95648 0.92061 0.92449 0.96190 1.21911 1.06340 1.03317 1.31164 0.93100 1.25807 1.02511 0.96207 0.93999 1.70804 1.27738 1.12641 1.43854 0.83554 0.75335 0.75085 0.76370 1.20861 1.21408 1.21510 1.22876 0.97045 0.96200 0.91059 0.92441 0.91837 0.91790 0.78879 0.90762 0.94020 0.91933 0.95154 0.92225 0.91681 0.91856 0.91033 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 9.53 37.16 0.35 -1.58 16 2 C 0.11 1.46 3.61 -26.73 -0.10 1.36 16 3 H 0.05 0.72 7.34 -51.93 -0.38 0.33 16 4 O -0.55 -7.96 13.27 -35.23 -0.47 -8.43 16 5 C 0.06 0.96 4.23 -3.83 -0.02 0.94 16 6 N -0.52 -10.60 5.11 -231.24 -1.18 -11.79 16 7 C 0.04 0.78 5.72 -2.29 -0.01 0.77 16 8 C -0.12 -2.82 5.86 -24.59 -0.14 -2.96 16 9 C 0.02 0.46 2.43 -89.95 -0.22 0.24 16 10 H 0.02 0.55 7.92 -51.93 -0.41 0.14 16 11 C -0.59 -16.79 8.47 -34.44 -0.29 -17.08 16 12 H 0.05 1.45 7.53 -52.48 -0.40 1.05 16 13 C 0.02 0.54 5.36 -17.82 -0.10 0.44 16 14 N -0.91 -27.60 13.49 55.43 0.75 -26.86 16 15 Si 1.07 25.43 29.90 -169.99 -5.08 20.34 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.06 1.25 6.44 -2.83 -0.02 1.23 16 20 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.37 3.47 9.08 45.56 0.41 3.88 16 24 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 25 H 0.04 0.67 7.85 -51.93 -0.41 0.26 16 26 H 0.06 1.17 8.12 -51.93 -0.42 0.74 16 27 H 0.03 0.57 7.62 -51.93 -0.40 0.17 16 28 H 0.06 1.45 6.77 -51.93 -0.35 1.10 16 29 H 0.06 1.64 8.04 -51.93 -0.42 1.22 16 30 H 0.27 8.05 5.59 -40.82 -0.23 7.83 16 31 H 0.07 1.70 7.63 -51.93 -0.40 1.30 16 32 H 0.03 0.69 7.56 -51.93 -0.39 0.30 16 LS Contribution 258.24 15.07 3.89 3.89 Total: -1.00 -31.61 258.24 -6.90 -38.51 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.27 Total: 0.97 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -0.54 Total: -16.64 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: -0.43 Total: -38.64 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.47 Total: -8.43 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.61 -6.90 -38.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306760937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.706 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds