Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46722 * 2 1 4 4 O 1.42899 * 109.47226 * 239.99851 * 2 1 3 5 5 C 1.52992 * 109.46632 * 119.99389 * 2 1 3 6 6 N 1.46903 * 109.46906 * 185.00138 * 5 2 1 7 7 C 1.47848 * 110.99969 * 69.15848 * 6 5 2 8 8 C 1.54913 * 104.79684 * 146.36377 * 7 6 5 9 9 C 1.55133 * 101.65243 * 322.93112 * 8 7 6 10 10 H 1.09005 * 110.85852 * 277.19964 * 9 8 7 11 11 C 1.50698 * 110.70738 * 154.03694 * 9 8 7 12 12 H 1.08005 * 119.99819 * 246.40233 * 11 9 8 13 13 C 1.37875 * 120.00046 * 66.39574 * 11 9 8 14 14 N 1.31511 * 120.00192 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00310 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00304 * 15 13 11 19 19 C 1.47445 * 111.00338 * 190.00037 * 6 5 2 20 20 H 1.09005 * 109.47293 * 60.00518 * 1 2 3 21 21 H 1.09002 * 109.47109 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47768 * 300.00275 * 1 2 3 23 23 H 0.96694 * 113.99883 * 59.99866 * 4 2 1 24 24 H 1.09002 * 109.47304 * 65.00429 * 5 2 1 25 25 H 1.08998 * 109.47680 * 305.00202 * 5 2 1 26 26 H 1.09000 * 110.37558 * 265.19294 * 7 6 5 27 27 H 1.08997 * 110.37231 * 27.53433 * 7 6 5 28 28 H 1.08996 * 110.98774 * 204.83802 * 8 7 6 29 29 H 1.08994 * 110.98886 * 81.02350 * 8 7 6 30 30 H 0.97001 * 119.99934 * 359.97438 * 14 13 11 31 31 H 1.08996 * 109.88644 * 117.33707 * 19 6 5 32 32 H 1.09003 * 110.01926 * 356.22634 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2493 6 7 3.5039 -0.6174 1.3112 7 6 3.9254 0.7719 1.5904 8 6 5.2095 0.6316 2.4455 9 6 4.8698 -0.6034 3.3207 10 1 4.2703 -0.3142 4.1840 11 6 6.1276 -1.3076 3.7598 12 1 6.3435 -2.3025 3.3991 13 6 7.0029 -0.6818 4.6219 14 7 6.7399 0.5294 5.0615 15 14 8.5625 -1.5545 5.1656 16 1 9.3270 -0.6746 6.0858 17 1 9.3940 -1.8692 3.9762 18 1 8.2062 -2.8137 5.8676 19 6 4.0518 -1.4944 2.3623 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.7210 -0.2702 -1.9979 24 1 1.7515 -1.7714 1.2057 25 1 1.6052 -0.2616 2.1370 26 1 4.1443 1.2963 0.6603 27 1 3.1521 1.2977 2.1505 28 1 5.3663 1.5163 3.0625 29 1 6.0781 0.4373 1.8164 30 1 5.9302 0.9827 4.7788 31 1 4.6984 -2.2495 1.9154 32 1 3.2399 -1.9768 2.9065 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306760937.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -84.316446 kcal Electronic energy + Delta-G solvation = -13137.732619 eV Core-core repulsion = 10903.582415 eV Total energy + Delta-G solvation = -2234.150204 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.18024 -38.07014 -35.40702 -32.97991 -30.94206 -30.13925 -26.91503 -25.64851 -22.71479 -21.72790 -21.38263 -19.02441 -18.23460 -17.16797 -16.35748 -15.70192 -15.46732 -15.10685 -14.51004 -14.41328 -13.96733 -13.72950 -13.25459 -13.15277 -12.74273 -12.69706 -12.57739 -12.17211 -11.93854 -11.79074 -11.64627 -11.36699 -10.86631 -10.58943 -10.48957 -9.21808 -8.61145 -6.33278 1.53508 1.61285 1.80699 2.57404 3.01143 3.18461 3.37536 3.90264 3.96320 4.12285 4.18834 4.24833 4.35912 4.38659 4.54620 4.66023 4.71932 4.78621 4.96442 4.98381 5.02865 5.14818 5.25424 5.32141 5.47607 6.00569 6.09326 6.18980 6.23221 6.64015 7.02190 7.46145 8.77970 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.081170 B = 0.007488 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.873897 B = 3738.550060 C = 3827.218746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.110 3.890 3 H 0.054 0.946 4 O -0.574 6.574 5 C 0.051 3.949 6 N -0.531 5.531 7 C 0.052 3.948 8 C -0.113 4.113 9 C 0.008 3.992 10 H -0.002 1.002 11 C -0.607 4.607 12 H 0.045 0.955 13 C -0.030 4.030 14 N -0.936 5.936 15 Si 1.114 2.886 16 H -0.283 1.283 17 H -0.273 1.273 18 H -0.271 1.271 19 C 0.065 3.935 20 H 0.080 0.920 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.387 0.613 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.261 0.739 31 H 0.055 0.945 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.863 0.453 -9.171 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.050 3.950 3 H 0.072 0.928 4 O -0.382 6.382 5 C -0.077 4.077 6 N -0.255 5.255 7 C -0.075 4.075 8 C -0.151 4.151 9 C -0.011 4.011 10 H 0.016 0.984 11 C -0.645 4.645 12 H 0.063 0.937 13 C -0.228 4.228 14 N -0.574 5.574 15 Si 0.936 3.064 16 H -0.208 1.208 17 H -0.198 1.198 18 H -0.197 1.197 19 C -0.062 4.062 20 H 0.099 0.901 21 H 0.080 0.920 22 H 0.089 0.911 23 H 0.236 0.764 24 H 0.091 0.909 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.080 0.067 -8.283 12.290 hybrid contribution -1.902 0.517 -0.320 1.997 sum -10.982 0.584 -8.602 13.962 Atomic orbital electron populations 1.22425 0.94206 1.03081 1.03710 1.21732 0.93467 0.94669 0.85093 0.92791 1.86623 1.77607 1.57569 1.16379 1.22451 0.87411 1.01393 0.96465 1.63567 1.10084 1.06393 1.45462 1.23019 0.95974 0.89888 0.98632 1.22658 0.96618 0.98536 0.97325 1.19977 0.94956 0.93504 0.92668 0.98411 1.22277 1.07571 1.03336 1.31296 0.93686 1.27231 1.05459 0.96181 0.93914 1.70914 1.27802 1.13643 1.45031 0.82962 0.72072 0.74680 0.76670 1.20850 1.19821 1.19659 1.22637 0.96829 0.95786 0.90958 0.90137 0.91998 0.91065 0.76388 0.90932 0.93256 0.90043 0.93550 0.93497 0.93726 0.92881 0.92647 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 9.53 71.98 0.69 -2.39 16 2 C 0.11 2.70 3.61 30.59 0.11 2.81 16 3 H 0.05 1.31 7.34 -2.39 -0.02 1.30 16 4 O -0.57 -15.16 13.27 -148.98 -1.98 -17.13 16 5 C 0.05 1.60 4.23 86.30 0.37 1.96 16 6 N -0.53 -20.88 5.11 -885.52 -4.53 -25.40 16 7 C 0.05 2.02 5.72 86.77 0.50 2.51 16 8 C -0.11 -5.41 5.86 31.98 0.19 -5.22 16 9 C 0.01 0.43 2.43 -10.36 -0.03 0.41 16 10 H 0.00 -0.12 7.92 -2.38 -0.02 -0.14 16 11 C -0.61 -35.15 8.47 25.60 0.22 -34.93 16 12 H 0.04 2.59 7.53 -2.91 -0.02 2.57 16 13 C -0.03 -1.72 5.36 84.65 0.45 -1.26 16 14 N -0.94 -57.46 13.49 21.45 0.29 -57.17 16 15 Si 1.11 51.04 29.90 68.60 2.05 53.09 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 C 0.07 2.96 6.44 86.65 0.56 3.52 16 20 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.39 6.22 9.08 -74.06 -0.67 5.55 16 24 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 25 H 0.05 1.48 7.85 -2.39 -0.02 1.46 16 26 H 0.08 2.86 8.12 -2.39 -0.02 2.84 16 27 H 0.05 1.64 7.62 -2.39 -0.02 1.63 16 28 H 0.05 2.33 6.77 -2.39 -0.02 2.31 16 29 H 0.04 2.28 8.04 -2.39 -0.02 2.26 16 30 H 0.26 15.98 5.59 -92.71 -0.52 15.46 16 31 H 0.06 2.65 7.63 -2.39 -0.02 2.63 16 32 H 0.04 1.82 7.56 -2.39 -0.02 1.80 16 Total: -1.00 -67.68 258.24 -0.45 -68.13 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.67 Total: 11.08 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 3.05 Total: -32.59 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -4.24 Total: -82.57 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -1.98 Total: -17.13 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.05 Total: 53.09 kcal Total: -67.68 -0.45 -68.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306760937.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.186 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds