Wall clock time and date at job start Mon Mar 30 2020 01:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47139 * 2 1 4 4 O 1.42899 * 109.47103 * 119.99708 * 2 1 3 5 5 C 1.52994 * 109.47366 * 239.99557 * 2 1 3 6 6 N 1.46904 * 109.47282 * 179.97438 * 5 2 1 7 7 C 1.48531 * 111.00046 * 307.39765 * 6 5 2 8 8 C 1.54936 * 103.22830 * 200.27790 * 7 6 5 9 9 C 1.54599 * 102.92020 * 37.41634 * 8 7 6 10 10 H 1.08996 * 110.39267 * 97.00121 * 9 8 7 11 11 C 1.50699 * 110.30739 * 219.12954 * 9 8 7 12 12 H 1.07999 * 120.00803 * 115.71605 * 11 9 8 13 13 C 1.37881 * 119.99889 * 295.71425 * 11 9 8 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.47900 * 110.99992 * 190.00250 * 6 5 2 20 20 H 1.08997 * 109.47774 * 300.00205 * 1 2 3 21 21 H 1.09005 * 109.47181 * 60.00377 * 1 2 3 22 22 H 1.09006 * 109.47292 * 180.02562 * 1 2 3 23 23 H 0.96702 * 114.00300 * 299.99640 * 4 2 1 24 24 H 1.08999 * 109.47290 * 60.00086 * 5 2 1 25 25 H 1.09000 * 109.47560 * 299.99823 * 5 2 1 26 26 H 1.09005 * 110.66811 * 318.71205 * 7 6 5 27 27 H 1.08997 * 110.66490 * 81.67784 * 7 6 5 28 28 H 1.09003 * 110.72510 * 279.05957 * 8 7 6 29 29 H 1.08995 * 110.72419 * 155.77214 * 8 7 6 30 30 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 31 31 H 1.09001 * 109.91971 * 26.49422 * 19 6 5 32 32 H 1.09004 * 109.91694 * 265.19928 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2491 6 7 3.5090 -0.7208 -1.2494 7 6 4.0409 0.6546 -1.0713 8 6 5.4886 0.5477 -1.6126 9 6 5.3379 -0.4108 -2.8161 10 1 5.2535 0.1548 -3.7439 11 6 6.5116 -1.3536 -2.8841 12 1 6.3607 -2.4145 -2.7498 13 6 7.7783 -0.8617 -3.1177 14 7 8.8026 -1.6845 -3.1776 15 14 8.0396 0.9733 -3.3493 16 1 8.3065 1.6055 -2.0323 17 1 6.8217 1.5750 -3.9494 18 1 9.1983 1.1986 -4.2504 19 6 4.0390 -1.1931 -2.5469 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 1.7210 -0.2700 1.9980 24 1 1.6767 -0.2076 -2.1392 25 1 1.6767 -1.7490 -1.2491 26 1 3.4629 1.3694 -1.6571 27 1 4.0410 0.9335 -0.0176 28 1 6.1513 0.1206 -0.8599 29 1 5.8513 1.5224 -1.9389 30 1 9.6937 -1.3384 -3.3416 31 1 3.3156 -0.9949 -3.3378 32 1 4.2525 -2.2607 -2.4944 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306760939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:27 Heat of formation + Delta-G solvation = -48.021190 kcal Electronic energy + Delta-G solvation = -13218.783292 eV Core-core repulsion = 10986.206968 eV Total energy + Delta-G solvation = -2232.576324 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.70733 -36.77598 -33.17614 -31.71566 -30.02445 -28.41187 -25.85624 -23.48769 -21.78354 -19.91072 -19.25085 -17.27608 -16.81266 -15.67913 -14.72387 -14.55261 -13.95626 -13.59067 -13.22962 -12.77447 -12.54372 -12.33565 -11.94361 -11.76659 -11.40926 -11.18666 -10.66965 -10.56262 -10.33572 -9.95952 -9.91513 -9.77986 -9.39956 -8.95090 -8.50210 -7.71936 -6.00800 -3.98425 3.32322 3.40014 3.41187 4.29958 4.46772 4.52549 4.92656 5.15572 5.19027 5.29183 5.51579 5.60102 5.65300 5.79627 5.90628 5.93605 6.02644 6.10048 6.22079 6.30867 6.65275 6.76036 6.91957 7.17854 7.23818 7.67565 7.73782 7.84032 7.85421 8.59957 9.03914 9.61497 11.12604 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.066125 B = 0.008650 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.336130 B = 3236.263304 C = 3354.454840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.101 3.899 3 H 0.053 0.947 4 O -0.547 6.547 5 C 0.053 3.947 6 N -0.503 5.503 7 C 0.038 3.962 8 C -0.129 4.129 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.502 4.502 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.903 5.903 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.267 1.267 18 H -0.293 1.293 19 C 0.053 3.947 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.366 0.634 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.262 0.738 31 H 0.022 0.978 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.442 6.414 5.136 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.042 3.958 3 H 0.071 0.929 4 O -0.350 6.350 5 C -0.076 4.076 6 N -0.227 5.227 7 C -0.090 4.090 8 C -0.167 4.167 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.540 4.540 12 H 0.094 0.906 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.192 1.192 18 H -0.220 1.220 19 C -0.075 4.075 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.212 0.788 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.812 5.653 5.064 15.760 hybrid contribution -0.360 1.934 -0.402 2.007 sum -14.171 7.586 4.662 16.737 Atomic orbital electron populations 1.22512 0.96869 1.02785 1.02132 1.21863 0.91811 0.95381 0.86744 0.92950 1.86737 1.76742 1.56595 1.14961 1.22318 0.90250 1.00894 0.94163 1.64783 1.05106 1.20285 1.32554 1.23192 0.96577 0.89530 0.99718 1.22949 0.94624 0.98743 1.00407 1.20003 0.93969 0.94222 0.93311 0.95180 1.21065 0.89939 0.94685 1.48289 0.90638 1.24995 0.96063 0.97413 0.94741 1.69907 0.99414 1.34615 1.50210 0.86911 0.77430 0.86637 0.78238 1.20264 1.19228 1.22034 1.22965 0.95853 1.01351 0.87288 0.92445 0.91836 0.91712 0.78834 0.94128 0.90448 0.95424 0.91239 0.90356 0.93545 0.92772 0.95944 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.53 37.15 0.35 -1.44 16 2 C 0.10 1.31 3.18 -26.74 -0.09 1.23 16 3 H 0.05 0.66 6.79 -51.93 -0.35 0.31 16 4 O -0.55 -7.72 13.18 -35.23 -0.46 -8.18 16 5 C 0.05 0.82 4.72 -3.82 -0.02 0.80 16 6 N -0.50 -9.87 5.26 -230.45 -1.21 -11.09 16 7 C 0.04 0.71 5.11 -1.90 -0.01 0.70 16 8 C -0.13 -2.87 4.93 -24.87 -0.12 -3.00 16 9 C 0.00 0.11 2.43 -90.41 -0.22 -0.11 16 10 H 0.03 0.74 7.09 -51.93 -0.37 0.37 16 11 C -0.50 -14.44 8.96 -34.44 -0.31 -14.74 16 12 H 0.08 2.36 7.59 -52.49 -0.40 1.96 16 13 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 14 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 15 Si 0.88 22.06 24.86 -169.99 -4.23 17.84 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.27 -6.41 6.40 56.52 0.36 -6.05 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 C 0.05 1.12 6.35 -2.75 -0.02 1.11 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.37 3.37 9.08 45.56 0.41 3.79 16 24 H 0.04 0.59 7.81 -51.93 -0.41 0.18 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.03 0.47 8.00 -51.93 -0.42 0.06 16 27 H 0.07 1.22 7.65 -51.93 -0.40 0.82 16 28 H 0.08 1.89 7.86 -51.93 -0.41 1.48 16 29 H 0.05 1.00 6.17 -51.93 -0.32 0.67 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 32 H 0.08 1.80 7.39 -51.93 -0.38 1.41 16 LS Contribution 252.43 15.07 3.80 3.80 Total: -1.00 -32.15 252.43 -6.14 -38.29 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.29 Total: 0.24 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -0.52 Total: -13.54 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.44 Total: -38.45 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.46 Total: -8.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.23 Total: 17.84 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.15 -6.14 -38.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306760939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.729 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds