Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46724 * 2 1 4 4 C 1.53002 * 109.47042 * 240.00686 * 2 1 3 5 5 O 1.42899 * 109.46961 * 304.99379 * 4 2 1 6 6 N 1.46896 * 109.47354 * 120.00333 * 2 1 3 7 7 C 1.47842 * 111.00045 * 304.89111 * 6 2 1 8 8 C 1.54910 * 104.79656 * 213.63860 * 7 6 2 9 9 C 1.55142 * 101.65254 * 37.07065 * 8 7 6 10 10 H 1.08997 * 110.85765 * 82.80184 * 9 8 7 11 11 C 1.50700 * 110.70354 * 205.96464 * 9 8 7 12 12 H 1.08004 * 119.99673 * 113.59693 * 11 9 8 13 13 C 1.37879 * 120.00253 * 293.59769 * 11 9 8 14 14 N 1.31517 * 119.99843 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00266 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47150 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46998 * 119.99784 * 15 13 11 18 18 H 1.48502 * 109.47147 * 240.00286 * 15 13 11 19 19 C 1.47443 * 110.99971 * 184.04744 * 6 2 1 20 20 H 1.08996 * 109.46826 * 305.58148 * 1 2 3 21 21 H 1.09001 * 109.47232 * 65.58325 * 1 2 3 22 22 H 1.08999 * 109.46838 * 185.58679 * 1 2 3 23 23 H 1.08997 * 109.46972 * 184.99700 * 4 2 1 24 24 H 1.09002 * 109.47303 * 64.99344 * 4 2 1 25 25 H 0.96695 * 114.00573 * 179.97438 * 5 4 2 26 26 H 1.09008 * 110.37313 * 332.46156 * 7 6 2 27 27 H 1.08995 * 110.37788 * 94.80821 * 7 6 2 28 28 H 1.08999 * 110.98873 * 278.97710 * 8 7 6 29 29 H 1.09003 * 110.98802 * 155.16357 * 8 7 6 30 30 H 0.96993 * 119.99973 * 179.97438 * 14 13 11 31 31 H 1.08995 * 109.88906 * 242.66313 * 19 6 2 32 32 H 1.08999 * 109.88921 * 3.85170 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4703 -2.0302 -1.3096 6 7 2.0198 -0.6925 1.1993 7 6 1.4520 -0.0935 2.4260 8 6 2.5708 -0.2324 3.4884 9 6 3.8436 0.0199 2.6380 10 1 4.0251 1.0880 2.5186 11 6 5.0401 -0.6561 3.2564 12 1 5.5208 -1.4770 2.7450 13 6 5.5213 -0.2266 4.4750 14 7 4.9357 0.7728 5.0980 15 14 7.0040 -1.0649 5.2419 16 1 7.4748 -2.1531 4.3478 17 1 8.0926 -0.0721 5.4281 18 1 6.6237 -1.6355 6.5591 19 6 3.4904 -0.6286 1.2829 20 1 -0.3633 0.5979 0.8358 21 1 -0.3634 0.4248 -0.9358 22 1 -0.3633 -1.0228 0.1000 23 1 3.1263 -0.7993 -1.2057 24 1 1.7516 -0.1581 -2.1370 25 1 1.7500 -2.5460 -2.0782 26 1 1.2145 0.9574 2.2603 27 1 0.5621 -0.6399 2.7384 28 1 2.5799 -1.2345 3.9171 29 1 2.4655 0.5229 4.2673 30 1 5.2740 1.0747 5.9554 31 1 3.9087 -1.6338 1.2326 32 1 3.8821 -0.0204 0.4676 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306837141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = -53.164091 kcal Electronic energy + Delta-G solvation = -13304.611430 eV Core-core repulsion = 11071.812093 eV Total energy + Delta-G solvation = -2232.799337 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.63375 -36.26831 -33.50498 -31.72361 -28.51628 -28.21953 -25.78430 -24.16985 -21.15808 -19.59699 -19.08174 -17.20003 -16.43932 -15.69253 -14.49059 -14.31195 -13.95856 -13.73048 -12.73552 -12.51086 -12.34880 -11.87653 -11.72676 -11.48643 -11.00816 -10.82199 -10.62222 -10.49036 -10.28427 -10.15763 -9.67673 -9.59514 -9.22505 -8.81512 -8.36928 -7.45390 -6.00331 -4.02422 3.31073 3.39016 3.43445 4.44573 4.52088 4.69131 5.24933 5.32744 5.35591 5.57880 5.76874 5.88398 5.91953 6.04001 6.13956 6.25383 6.32349 6.42544 6.57271 6.70680 6.92937 7.20924 7.25370 7.64068 7.67731 7.84374 7.94091 7.98538 8.04914 8.45101 8.99607 9.61322 11.09916 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059191 B = 0.008812 C = 0.008058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.934834 B = 3176.784330 C = 3473.812799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.075 3.925 3 H 0.045 0.955 4 C 0.086 3.914 5 O -0.554 6.554 6 N -0.518 5.518 7 C 0.039 3.961 8 C -0.105 4.105 9 C 0.033 3.967 10 H 0.029 0.971 11 C -0.508 4.508 12 H 0.057 0.943 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.048 3.952 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.367 0.633 26 H 0.030 0.970 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.259 0.741 31 H 0.068 0.932 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.928 -1.015 -9.691 11.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 H 0.063 0.937 4 C 0.008 3.992 5 O -0.358 6.358 6 N -0.243 5.243 7 C -0.089 4.089 8 C -0.144 4.144 9 C 0.013 3.987 10 H 0.047 0.953 11 C -0.547 4.547 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.079 4.079 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.212 0.788 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.363 -1.217 -9.023 11.108 hybrid contribution 1.389 0.393 0.011 1.443 sum -4.975 -0.825 -9.012 10.327 Atomic orbital electron populations 1.21720 0.94457 1.02789 1.00453 1.21805 0.96022 0.94512 0.91115 0.93686 1.22254 0.96755 0.83955 0.96244 1.86618 1.72319 1.27160 1.49654 1.63675 1.07754 1.52218 1.00675 1.23109 0.98741 0.95781 0.91232 1.22631 0.93888 1.01165 0.96669 1.19834 0.93656 0.95842 0.89319 0.95265 1.21127 1.12500 1.16795 1.04232 0.92442 1.24990 0.96926 0.94968 0.97149 1.69972 1.40675 1.26632 1.15697 0.86550 0.82794 0.79504 0.79246 1.19744 1.21132 1.21036 1.23009 0.85706 1.00393 0.98812 0.93033 0.93260 0.91179 0.93526 0.94325 0.78820 0.95154 0.92113 0.92494 0.91348 0.93150 0.91404 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.57 37.16 0.32 -1.71 16 2 C 0.07 1.25 2.02 -67.71 -0.14 1.11 16 3 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 4 C 0.09 1.25 6.56 37.16 0.24 1.49 16 5 O -0.55 -8.12 12.84 -35.23 -0.45 -8.57 16 6 N -0.52 -10.45 4.98 -223.29 -1.11 -11.56 16 7 C 0.04 0.79 5.43 -2.30 -0.01 0.78 16 8 C -0.10 -2.53 5.94 -24.59 -0.15 -2.68 16 9 C 0.03 0.84 2.78 -89.95 -0.25 0.59 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.51 -14.19 8.47 -34.44 -0.29 -14.48 16 12 H 0.06 1.59 7.53 -52.48 -0.40 1.20 16 13 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 14 N -0.89 -25.90 12.48 55.43 0.69 -25.21 16 15 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.05 1.06 5.68 -2.83 -0.02 1.04 16 20 H 0.05 0.75 7.01 -51.93 -0.36 0.38 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 1.12 7.75 -51.93 -0.40 0.72 16 23 H 0.05 0.70 6.64 -51.93 -0.34 0.35 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.37 3.52 9.12 45.56 0.42 3.93 16 26 H 0.03 0.59 7.37 -51.92 -0.38 0.21 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.44 8.04 -51.93 -0.42 1.02 16 29 H 0.07 1.74 7.76 -51.93 -0.40 1.34 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.07 1.57 7.63 -51.93 -0.40 1.17 16 32 H 0.03 0.62 6.64 -51.93 -0.34 0.27 16 LS Contribution 256.46 15.07 3.86 3.86 Total: -1.00 -30.36 256.46 -6.70 -37.05 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -4.28 Total: 0.13 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -0.39 Total: -12.23 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.42 Total: -36.77 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.45 Total: -8.57 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.36 -6.70 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306837141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.112 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds