Wall clock time and date at job start Mon Mar 30 2020 02:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46724 * 2 1 4 4 C 1.53002 * 109.47042 * 240.00686 * 2 1 3 5 5 O 1.42899 * 109.46961 * 304.99379 * 4 2 1 6 6 N 1.46896 * 109.47354 * 120.00333 * 2 1 3 7 7 C 1.47842 * 111.00045 * 304.89111 * 6 2 1 8 8 C 1.54910 * 104.79656 * 213.63860 * 7 6 2 9 9 C 1.55142 * 101.65254 * 37.07065 * 8 7 6 10 10 H 1.08997 * 110.85765 * 82.80184 * 9 8 7 11 11 C 1.50700 * 110.70354 * 205.96464 * 9 8 7 12 12 H 1.08004 * 119.99673 * 113.59693 * 11 9 8 13 13 C 1.37879 * 120.00253 * 293.59769 * 11 9 8 14 14 N 1.31517 * 119.99843 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00266 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47150 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46998 * 119.99784 * 15 13 11 18 18 H 1.48502 * 109.47147 * 240.00286 * 15 13 11 19 19 C 1.47443 * 110.99971 * 184.04744 * 6 2 1 20 20 H 1.08996 * 109.46826 * 305.58148 * 1 2 3 21 21 H 1.09001 * 109.47232 * 65.58325 * 1 2 3 22 22 H 1.08999 * 109.46838 * 185.58679 * 1 2 3 23 23 H 1.08997 * 109.46972 * 184.99700 * 4 2 1 24 24 H 1.09002 * 109.47303 * 64.99344 * 4 2 1 25 25 H 0.96695 * 114.00573 * 179.97438 * 5 4 2 26 26 H 1.09008 * 110.37313 * 332.46156 * 7 6 2 27 27 H 1.08995 * 110.37788 * 94.80821 * 7 6 2 28 28 H 1.08999 * 110.98873 * 278.97710 * 8 7 6 29 29 H 1.09003 * 110.98802 * 155.16357 * 8 7 6 30 30 H 0.96993 * 119.99973 * 179.97438 * 14 13 11 31 31 H 1.08995 * 109.88906 * 242.66313 * 19 6 2 32 32 H 1.08999 * 109.88921 * 3.85170 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4703 -2.0302 -1.3096 6 7 2.0198 -0.6925 1.1993 7 6 1.4520 -0.0935 2.4260 8 6 2.5708 -0.2324 3.4884 9 6 3.8436 0.0199 2.6380 10 1 4.0251 1.0880 2.5186 11 6 5.0401 -0.6561 3.2564 12 1 5.5208 -1.4770 2.7450 13 6 5.5213 -0.2266 4.4750 14 7 4.9357 0.7728 5.0980 15 14 7.0040 -1.0649 5.2419 16 1 7.4748 -2.1531 4.3478 17 1 8.0926 -0.0721 5.4281 18 1 6.6237 -1.6355 6.5591 19 6 3.4904 -0.6286 1.2829 20 1 -0.3633 0.5979 0.8358 21 1 -0.3634 0.4248 -0.9358 22 1 -0.3633 -1.0228 0.1000 23 1 3.1263 -0.7993 -1.2057 24 1 1.7516 -0.1581 -2.1370 25 1 1.7500 -2.5460 -2.0782 26 1 1.2145 0.9574 2.2603 27 1 0.5621 -0.6399 2.7384 28 1 2.5799 -1.2345 3.9171 29 1 2.4655 0.5229 4.2673 30 1 5.2740 1.0747 5.9554 31 1 3.9087 -1.6338 1.2326 32 1 3.8821 -0.0204 0.4676 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306837141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:41 Heat of formation + Delta-G solvation = -76.238686 kcal Electronic energy + Delta-G solvation = -13305.612019 eV Core-core repulsion = 11071.812093 eV Total energy + Delta-G solvation = -2233.799926 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.19646 -37.56190 -35.28380 -33.48151 -30.27786 -29.90003 -27.09680 -26.13103 -22.71989 -21.47035 -20.61767 -18.63726 -18.24378 -17.18551 -16.46578 -15.97344 -15.31268 -15.02446 -14.49657 -14.17626 -13.74128 -13.49143 -13.34415 -13.04424 -12.95629 -12.61765 -12.35440 -12.16052 -11.92723 -11.58130 -11.47493 -11.20193 -10.90684 -10.73757 -10.50645 -9.06795 -8.15467 -6.24940 1.39518 1.41224 1.53188 2.42079 3.12537 3.15955 3.53815 4.03438 4.09251 4.21675 4.40872 4.43986 4.50320 4.56684 4.63079 4.81045 4.84958 4.98457 5.01250 5.07083 5.27052 5.32874 5.44783 5.56936 5.71229 5.86515 6.18916 6.33100 6.41145 6.83682 7.06819 7.42390 8.94462 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059191 B = 0.008812 C = 0.008058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.934834 B = 3176.784330 C = 3473.812799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.063 3.937 3 H 0.046 0.954 4 C 0.089 3.911 5 O -0.574 6.574 6 N -0.525 5.525 7 C 0.051 3.949 8 C -0.099 4.099 9 C 0.024 3.976 10 H 0.001 0.999 11 C -0.529 4.529 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.920 5.920 15 Si 0.957 3.043 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.063 3.937 20 H 0.051 0.949 21 H 0.075 0.925 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.389 0.611 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.261 0.739 31 H 0.054 0.946 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 -1.398 -10.887 12.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.046 4.046 3 H 0.064 0.936 4 C 0.011 3.989 5 O -0.381 6.381 6 N -0.250 5.250 7 C -0.076 4.076 8 C -0.138 4.138 9 C 0.005 3.995 10 H 0.019 0.981 11 C -0.567 4.567 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.560 5.560 15 Si 0.783 3.217 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.064 4.064 20 H 0.070 0.930 21 H 0.094 0.906 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.090 0.910 25 H 0.237 0.763 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.706 -1.612 -10.248 12.353 hybrid contribution 1.470 0.523 0.345 1.598 sum -5.236 -1.089 -9.903 11.255 Atomic orbital electron populations 1.21657 0.92751 1.02237 1.01976 1.22058 0.97458 0.94600 0.90458 0.93625 1.22203 0.96111 0.84318 0.96250 1.86553 1.72580 1.27539 1.51437 1.63683 1.06247 1.53188 1.01845 1.22984 0.97682 0.96764 0.90183 1.22426 0.95142 0.99194 0.97011 1.19813 0.93799 0.94176 0.91711 0.98117 1.21456 1.13520 1.16957 1.04756 0.92777 1.25790 0.99755 0.95580 0.97620 1.70088 1.42060 1.27783 1.16037 0.85514 0.79309 0.78619 0.78283 1.19052 1.20470 1.20622 1.22721 0.87325 0.99311 0.97084 0.93036 0.90564 0.92386 0.94412 0.90954 0.76310 0.94154 0.90512 0.94287 0.93510 0.93009 0.92715 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.57 71.98 0.62 -2.83 16 2 C 0.06 1.96 2.02 44.92 0.09 2.05 16 3 H 0.05 1.44 8.12 -2.39 -0.02 1.42 16 4 C 0.09 2.33 6.56 71.98 0.47 2.80 16 5 O -0.57 -15.30 12.84 -148.98 -1.91 -17.21 16 6 N -0.52 -20.53 4.98 -860.36 -4.28 -24.82 16 7 C 0.05 2.05 5.43 86.77 0.47 2.52 16 8 C -0.10 -4.87 5.94 31.98 0.19 -4.68 16 9 C 0.02 1.27 2.78 -10.36 -0.03 1.24 16 10 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 11 C -0.53 -30.00 8.47 25.60 0.22 -29.79 16 12 H 0.05 3.03 7.53 -2.91 -0.02 3.01 16 13 C 0.01 0.64 5.36 84.65 0.45 1.09 16 14 N -0.92 -54.41 12.48 21.45 0.27 -54.14 16 15 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 C 0.06 2.77 5.68 86.65 0.49 3.27 16 20 H 0.05 1.36 7.01 -2.39 -0.02 1.34 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.70 7.75 -2.39 -0.02 1.69 16 23 H 0.04 1.04 6.64 -2.39 -0.02 1.03 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.39 6.38 9.12 -74.06 -0.68 5.70 16 26 H 0.04 1.53 7.37 -2.38 -0.02 1.51 16 27 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 29 H 0.05 2.45 7.76 -2.39 -0.02 2.44 16 30 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.05 2.53 7.63 -2.39 -0.02 2.51 16 32 H 0.04 1.75 6.64 -2.39 -0.02 1.73 16 Total: -1.00 -64.73 256.46 -0.51 -65.24 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.42 Total: 8.81 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 2.98 Total: -24.32 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -4.01 Total: -78.96 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.91 Total: -17.21 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -64.73 -0.51 -65.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306837141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.996 kcal (2) G-P(sol) polarization free energy of solvation -64.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds