Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48502 * 109.46791 * 275.41091 * 3 2 1 5 5 H 1.48500 * 109.47204 * 35.40936 * 3 2 1 6 6 H 1.48497 * 109.47100 * 155.41245 * 3 2 1 7 7 C 1.39901 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00218 * 341.72406 * 7 2 1 9 9 C 1.41313 * 120.00021 * 161.72714 * 7 2 1 10 10 C 1.40728 * 120.17759 * 150.17824 * 9 7 2 11 11 C 1.37963 * 119.76571 * 179.97438 * 10 9 7 12 12 O 1.35939 * 119.93105 * 180.02562 * 11 10 9 13 13 C 1.39398 * 120.14396 * 0.27489 * 11 10 9 14 14 F 1.35101 * 119.82112 * 179.72805 * 13 11 10 15 15 C 1.39010 * 120.36645 * 359.44820 * 13 11 10 16 16 F 1.35102 * 119.88953 * 180.27698 * 15 13 11 17 17 C 1.37796 * 120.22483 * 0.55364 * 15 13 11 18 18 H 0.96997 * 119.99835 * 0.02562 * 1 2 3 19 19 H 1.07997 * 120.11965 * 0.02562 * 10 9 7 20 20 H 0.96702 * 114.00287 * 89.99739 * 12 11 10 21 21 H 1.08003 * 120.07415 * 179.74777 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3758 2.1123 -1.3939 5 1 1.5020 2.6169 0.8112 6 1 3.5927 1.4097 0.5825 7 6 2.0081 -1.2116 0.0005 8 1 1.5089 -2.1232 0.2942 9 6 3.3677 -1.2428 -0.3832 10 6 4.2357 -2.2053 0.1651 11 6 5.5614 -2.2283 -0.2159 12 8 6.4026 -3.1570 0.3112 13 6 6.0415 -1.2980 -1.1364 14 9 7.3422 -1.3230 -1.5007 15 6 5.1880 -0.3483 -1.6859 16 9 5.6623 0.5452 -2.5814 17 6 3.8611 -0.3115 -1.3161 18 1 -0.4850 0.8400 -0.0004 19 1 3.8651 -2.9240 0.8810 20 1 6.4471 -3.9798 -0.1949 21 1 3.2010 0.4300 -1.7415 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306907661.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -125.226281 kcal Electronic energy + Delta-G solvation = -12401.359340 eV Core-core repulsion = 9684.962785 eV Total energy + Delta-G solvation = -2716.396554 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.039 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.44706 -47.46525 -38.39081 -36.13165 -33.58661 -30.12788 -28.88048 -25.32210 -22.21076 -21.14153 -18.53976 -17.24024 -16.68926 -15.92092 -15.81569 -15.34295 -14.82999 -14.10938 -13.74515 -13.68438 -13.18937 -12.91179 -12.25426 -11.82008 -11.30568 -11.26892 -10.57213 -10.34580 -10.12037 -9.90039 -9.37902 -7.86067 -7.75942 -7.27254 -4.83999 2.02125 2.04252 2.94827 3.04582 3.15147 3.76522 3.97319 4.58596 4.94666 5.19740 5.45875 5.85397 6.16685 6.28151 6.60850 6.90031 6.97027 7.13932 7.39090 7.52813 7.96402 8.12467 8.30101 8.43823 9.72659 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.042406 B = 0.014293 C = 0.011453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.121738 B = 1958.518287 C = 2444.097099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.084 3.916 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.424 4.424 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.216 4.216 11 C 0.134 3.866 12 O -0.498 6.498 13 C -0.106 4.106 14 F -0.154 7.154 15 C 0.125 3.875 16 F -0.149 7.149 17 C -0.264 4.264 18 H 0.292 0.708 19 H 0.124 0.876 20 H 0.383 0.617 21 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -0.904 -0.876 4.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.450 4.450 8 H 0.119 0.881 9 C 0.107 3.893 10 C -0.236 4.236 11 C 0.089 3.911 12 O -0.307 6.307 13 C -0.127 4.127 14 F -0.133 7.133 15 C 0.105 3.895 16 F -0.127 7.127 17 C -0.284 4.284 18 H 0.103 0.897 19 H 0.142 0.858 20 H 0.237 0.763 21 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.803 -0.352 -0.465 3.847 hybrid contribution 0.425 0.540 -0.628 0.931 sum 4.227 0.188 -1.093 4.370 Atomic orbital electron populations 1.69679 1.08170 1.31112 1.31736 1.26252 0.94845 1.02089 0.90638 0.86345 0.81562 0.79386 0.79544 1.19008 1.20947 1.16394 1.19541 0.92499 0.96593 1.36399 0.88068 1.17318 0.93200 0.89768 0.89047 1.21181 0.90674 1.06002 1.05705 1.17939 0.89175 0.90684 0.93346 1.84769 1.65309 1.27613 1.52983 1.17425 0.79163 1.06748 1.09385 1.91316 1.33704 1.96759 1.91559 1.17329 0.92419 0.88903 0.90841 1.91397 1.89147 1.66316 1.65880 1.20955 0.93122 1.07788 1.06562 0.89712 0.85845 0.76265 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.18 13.93 55.55 0.77 -18.40 14 2 C 0.08 2.04 5.40 -17.34 -0.09 1.94 14 3 Si 0.91 19.57 24.52 -169.99 -4.17 15.40 14 4 H -0.26 -5.60 6.71 56.52 0.38 -5.22 14 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 14 6 H -0.24 -5.42 6.87 56.52 0.39 -5.04 14 7 C -0.42 -10.46 9.56 -37.79 -0.36 -10.82 14 8 H 0.10 2.55 8.06 -52.49 -0.42 2.13 14 9 C 0.11 2.63 5.10 -106.84 -0.55 2.08 14 10 C -0.22 -4.74 9.72 -38.74 -0.38 -5.11 14 11 C 0.13 2.88 6.70 -39.25 -0.26 2.61 14 12 O -0.50 -9.24 13.35 -19.55 -0.26 -9.51 14 13 C -0.11 -2.43 7.34 -38.86 -0.29 -2.72 14 14 F -0.15 -3.49 17.01 2.25 0.04 -3.45 14 15 C 0.13 2.93 7.29 -39.46 -0.29 2.64 14 16 F -0.15 -3.36 17.17 2.25 0.04 -3.33 14 17 C -0.26 -6.25 7.14 -38.80 -0.28 -6.52 14 18 H 0.29 6.42 8.30 -40.82 -0.34 6.08 14 19 H 0.12 2.49 8.06 -52.49 -0.42 2.07 14 20 H 0.38 5.01 9.06 45.56 0.41 5.42 14 21 H 0.12 2.85 4.73 -52.48 -0.25 2.60 14 LS Contribution 203.11 15.07 3.06 3.06 Total: -1.00 -26.63 203.11 -2.86 -29.49 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: 0.15 Total: 2.63 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.49 Total: -15.90 kcal Atomic # 7 Polarization: -19.18 SS G_CDS: 0.77 Total: -18.40 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.26 Total: -9.51 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.08 Total: -6.78 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.17 Total: 15.40 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -26.63 -2.86 -29.49 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306907661.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.735 kcal (2) G-P(sol) polarization free energy of solvation -26.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds