Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48502 * 109.46791 * 275.41091 * 3 2 1 5 5 H 1.48500 * 109.47204 * 35.40936 * 3 2 1 6 6 H 1.48497 * 109.47100 * 155.41245 * 3 2 1 7 7 C 1.39901 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00218 * 341.72406 * 7 2 1 9 9 C 1.41313 * 120.00021 * 161.72714 * 7 2 1 10 10 C 1.40728 * 120.17759 * 150.17824 * 9 7 2 11 11 C 1.37963 * 119.76571 * 179.97438 * 10 9 7 12 12 O 1.35939 * 119.93105 * 180.02562 * 11 10 9 13 13 C 1.39398 * 120.14396 * 0.27489 * 11 10 9 14 14 F 1.35101 * 119.82112 * 179.72805 * 13 11 10 15 15 C 1.39010 * 120.36645 * 359.44820 * 13 11 10 16 16 F 1.35102 * 119.88953 * 180.27698 * 15 13 11 17 17 C 1.37796 * 120.22483 * 0.55364 * 15 13 11 18 18 H 0.96997 * 119.99835 * 0.02562 * 1 2 3 19 19 H 1.07997 * 120.11965 * 0.02562 * 10 9 7 20 20 H 0.96702 * 114.00287 * 89.99739 * 12 11 10 21 21 H 1.08003 * 120.07415 * 179.74777 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3758 2.1123 -1.3939 5 1 1.5020 2.6169 0.8112 6 1 3.5927 1.4097 0.5825 7 6 2.0081 -1.2116 0.0005 8 1 1.5089 -2.1232 0.2942 9 6 3.3677 -1.2428 -0.3832 10 6 4.2357 -2.2053 0.1651 11 6 5.5614 -2.2283 -0.2159 12 8 6.4026 -3.1570 0.3112 13 6 6.0415 -1.2980 -1.1364 14 9 7.3422 -1.3230 -1.5007 15 6 5.1880 -0.3483 -1.6859 16 9 5.6623 0.5452 -2.5814 17 6 3.8611 -0.3115 -1.3161 18 1 -0.4850 0.8400 -0.0004 19 1 3.8651 -2.9240 0.8810 20 1 6.4471 -3.9798 -0.1949 21 1 3.2010 0.4300 -1.7415 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306907661.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -143.124259 kcal Electronic energy + Delta-G solvation = -12402.135454 eV Core-core repulsion = 9684.962785 eV Total energy + Delta-G solvation = -2717.172669 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.039 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -50.24799 -49.26409 -40.09388 -37.79005 -35.39453 -31.94495 -30.63019 -27.15214 -23.96292 -22.94593 -20.27312 -18.98629 -18.45427 -17.69150 -17.57348 -17.13789 -16.59325 -15.86381 -15.51673 -15.36269 -14.96428 -14.66282 -14.00051 -13.61809 -13.05675 -12.98430 -12.38114 -12.13579 -11.83960 -11.57151 -11.15452 -9.63251 -9.55789 -9.09106 -6.71475 0.22703 0.27777 1.23026 1.33046 1.43014 2.02483 2.19803 2.89743 3.11303 3.53700 3.64526 4.06407 4.39578 4.48491 4.89784 5.09907 5.23587 5.37240 5.56855 5.82269 6.09897 6.35551 6.55341 6.85222 7.96173 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.042406 B = 0.014293 C = 0.011453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.121738 B = 1958.518287 C = 2444.097099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.060 3.940 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.105 3.895 10 C -0.216 4.216 11 C 0.148 3.852 12 O -0.497 6.497 13 C -0.113 4.113 14 F -0.153 7.153 15 C 0.117 3.883 16 F -0.146 7.146 17 C -0.274 4.274 18 H 0.303 0.697 19 H 0.140 0.860 20 H 0.411 0.589 21 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 -0.899 -0.742 4.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.160 4.160 3 Si 0.769 3.231 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.101 3.899 10 C -0.236 4.236 11 C 0.102 3.898 12 O -0.310 6.310 13 C -0.134 4.134 14 F -0.132 7.132 15 C 0.097 3.903 16 F -0.125 7.125 17 C -0.294 4.294 18 H 0.114 0.886 19 H 0.158 0.842 20 H 0.270 0.730 21 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.654 -0.370 -0.342 4.681 hybrid contribution 0.266 0.427 -0.674 0.841 sum 4.919 0.057 -1.016 5.024 Atomic orbital electron populations 1.69673 1.08889 1.32402 1.32602 1.26721 0.95280 1.03803 0.90216 0.85751 0.80034 0.77442 0.79895 1.18432 1.19044 1.17932 1.19562 0.93233 0.96565 1.38119 0.89635 1.17427 0.93128 0.90312 0.89028 1.21359 0.90746 1.05736 1.05724 1.17853 0.89091 0.90747 0.92079 1.84705 1.64368 1.28544 1.53375 1.17664 0.79212 1.06900 1.09618 1.91320 1.33537 1.96758 1.91576 1.17420 0.92516 0.89243 0.91125 1.91398 1.89072 1.66256 1.65775 1.20994 0.93372 1.08127 1.06904 0.88602 0.84207 0.73026 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.46 13.93 21.82 0.30 -39.16 14 2 C 0.06 2.88 5.40 85.24 0.46 3.34 14 3 Si 0.95 39.22 24.52 68.60 1.68 40.90 14 4 H -0.26 -10.43 6.71 99.48 0.67 -9.77 14 5 H -0.26 -10.13 7.11 99.48 0.71 -9.42 14 6 H -0.26 -11.14 6.87 99.48 0.68 -10.46 14 7 C -0.45 -22.08 9.56 23.43 0.22 -21.85 14 8 H 0.09 4.38 8.06 -2.91 -0.02 4.35 14 9 C 0.10 4.88 5.10 -21.30 -0.11 4.77 14 10 C -0.22 -9.07 9.72 22.81 0.22 -8.85 14 11 C 0.15 5.98 6.70 22.48 0.15 6.13 14 12 O -0.50 -16.74 13.35 -92.87 -1.24 -17.98 14 13 C -0.11 -4.93 7.34 22.73 0.17 -4.76 14 14 F -0.15 -6.55 17.01 44.97 0.76 -5.78 14 15 C 0.12 5.29 7.29 22.35 0.16 5.46 14 16 F -0.15 -6.39 17.17 44.97 0.77 -5.62 14 17 C -0.27 -12.65 7.14 22.78 0.16 -12.49 14 18 H 0.30 13.11 8.30 -92.71 -0.77 12.34 14 19 H 0.14 5.35 8.06 -2.91 -0.02 5.33 14 20 H 0.41 9.14 9.06 -74.06 -0.67 8.46 14 21 H 0.12 5.59 4.73 -2.91 -0.01 5.58 14 Total: -1.00 -53.77 203.11 4.28 -49.49 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.56 Total: 6.41 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 1.44 Total: -28.27 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.30 Total: -39.16 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.24 Total: -17.98 kcal Atomic # 9 Polarization: -12.94 SS G_CDS: 1.54 Total: -11.40 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.68 Total: 40.90 kcal Total: -53.77 4.28 -49.49 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306907661.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.634 kcal (2) G-P(sol) polarization free energy of solvation -53.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds