Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48504 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47405 * 299.99822 * 3 2 1 6 6 H 1.48505 * 109.47260 * 60.00095 * 3 2 1 7 7 C 1.37881 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47228 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47001 * 179.97438 * 10 9 7 12 12 C 1.34951 * 126.02071 * 125.00178 * 11 10 9 13 13 C 1.35306 * 107.76190 * 180.02562 * 12 11 10 14 14 C 1.39968 * 107.91188 * 359.97438 * 13 12 11 15 15 Cl 1.73595 * 125.91615 * 180.02562 * 14 13 12 16 16 N 1.30904 * 108.17539 * 0.02562 * 14 13 12 17 17 H 0.96999 * 119.99610 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.47068 * 59.99475 * 9 7 2 19 19 H 1.09004 * 109.46508 * 299.99796 * 9 7 2 20 20 H 1.09003 * 109.46878 * 59.99859 * 10 9 7 21 21 H 1.08995 * 109.46890 * 299.99839 * 10 9 7 22 22 H 1.07996 * 126.12132 * 359.97438 * 12 11 10 23 23 H 1.08003 * 126.04518 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.6578 -5.9314 -0.8927 13 6 0.8044 -6.9222 -0.5452 14 6 0.1139 -6.5132 0.6016 15 17 -1.0957 -7.4307 1.4434 16 7 0.5382 -5.3190 0.9295 17 1 -0.4849 0.8401 -0.0004 18 1 0.6247 -2.5571 -0.8896 19 1 0.6241 -2.5566 0.8904 20 1 2.8719 -3.6043 0.8905 21 1 2.8719 -3.6044 -0.8894 22 1 2.3335 -5.9395 -1.7351 23 1 0.6783 -7.8625 -1.0614 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307319850.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = 59.858020 kcal Electronic energy + Delta-G solvation = -10252.894379 eV Core-core repulsion = 8128.613113 eV Total energy + Delta-G solvation = -2124.281266 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.81427 -36.47980 -34.28186 -32.28350 -30.02546 -28.86855 -24.99771 -21.95511 -20.92748 -19.99161 -17.11036 -16.15818 -15.01486 -14.69104 -14.26886 -13.61381 -13.24390 -12.92811 -12.33598 -11.88708 -11.42756 -11.18842 -11.04911 -10.70482 -10.35683 -10.10049 -9.84303 -9.34830 -8.91923 -8.49433 -8.22095 -6.12674 -4.18782 1.84364 2.19432 2.89775 3.24507 3.29980 3.33892 3.37993 4.35719 4.96675 5.23415 5.26699 5.80576 5.90534 6.01394 6.06247 6.40904 6.61340 7.26176 7.49008 7.60069 7.85168 7.92024 8.17460 8.87383 9.46310 10.98379 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.068323 B = 0.007058 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.720797 B = 3966.298874 C = 4250.976102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.014 3.986 10 C 0.129 3.871 11 N -0.335 5.335 12 C 0.060 3.940 13 C -0.273 4.273 14 C 0.104 3.896 15 Cl -0.013 7.013 16 N -0.266 5.266 17 H 0.263 0.737 18 H 0.022 0.978 19 H 0.035 0.965 20 H 0.079 0.921 21 H 0.090 0.910 22 H 0.178 0.822 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -11.776 -1.544 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.569 4.569 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.010 3.990 11 N -0.118 5.118 12 C -0.088 4.088 13 C -0.304 4.304 14 C -0.087 4.087 15 Cl 0.015 6.985 16 N -0.093 5.093 17 H 0.073 0.927 18 H 0.040 0.960 19 H 0.053 0.947 20 H 0.097 0.903 21 H 0.109 0.891 22 H 0.195 0.805 23 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.354 -10.633 -0.644 10.910 hybrid contribution 0.320 0.192 -0.552 0.666 sum 2.674 -10.441 -1.196 10.844 Atomic orbital electron populations 1.69992 1.06153 1.26891 1.49446 1.25015 0.94880 0.99476 0.94825 0.86441 0.79959 0.83303 0.77720 1.19610 1.20888 1.20843 1.21033 0.93046 0.90319 1.52514 0.92183 1.19388 0.93995 0.89954 0.99036 1.22431 0.94975 0.78996 1.02585 1.49188 1.28608 1.15014 1.19016 1.22595 1.00973 0.88668 0.96596 1.21140 1.04688 1.03277 1.01253 1.22551 0.96631 0.93430 0.96045 1.98342 1.52544 1.70030 1.77593 1.77443 1.05649 1.11949 1.14255 0.92740 0.95990 0.94685 0.90308 0.89145 0.80486 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 14 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 14 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 14 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 14 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 14 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 14 7 C -0.53 -14.38 9.11 -34.44 -0.31 -14.69 14 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 14 9 C 0.01 0.36 5.16 -27.88 -0.14 0.21 14 10 C 0.13 2.53 6.45 -4.04 -0.03 2.51 14 11 N -0.34 -6.40 3.68 -61.37 -0.23 -6.62 14 12 C 0.06 0.91 11.45 -17.23 -0.20 0.71 14 13 C -0.27 -4.13 10.80 -39.98 -0.43 -4.56 14 14 C 0.10 1.85 7.85 -17.30 -0.14 1.71 14 15 Cl -0.01 -0.19 29.32 -51.86 -1.52 -1.71 14 16 N -0.27 -5.56 12.42 32.94 0.41 -5.15 14 17 H 0.26 7.36 8.31 -40.82 -0.34 7.02 14 18 H 0.02 0.60 8.14 -51.93 -0.42 0.18 14 19 H 0.03 1.00 8.14 -51.93 -0.42 0.57 14 20 H 0.08 1.50 8.14 -51.93 -0.42 1.08 14 21 H 0.09 1.52 8.07 -51.93 -0.42 1.11 14 22 H 0.18 1.91 8.06 -52.49 -0.42 1.49 14 23 H 0.15 1.78 8.06 -52.48 -0.42 1.36 14 LS Contribution 230.49 15.07 3.47 3.47 Total: -1.00 -30.80 230.49 -5.57 -36.37 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: -2.07 Total: -4.17 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.35 Total: -12.50 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.92 Total: -37.46 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.80 -5.57 -36.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307319850.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.228 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds