Wall clock time and date at job start Mon Mar 30 2020 02:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48504 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47405 * 299.99822 * 3 2 1 6 6 H 1.48505 * 109.47260 * 60.00095 * 3 2 1 7 7 C 1.37881 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47228 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47001 * 179.97438 * 10 9 7 12 12 C 1.34951 * 126.02071 * 125.00178 * 11 10 9 13 13 C 1.35306 * 107.76190 * 180.02562 * 12 11 10 14 14 C 1.39968 * 107.91188 * 359.97438 * 13 12 11 15 15 Cl 1.73595 * 125.91615 * 180.02562 * 14 13 12 16 16 N 1.30904 * 108.17539 * 0.02562 * 14 13 12 17 17 H 0.96999 * 119.99610 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.47068 * 59.99475 * 9 7 2 19 19 H 1.09004 * 109.46508 * 299.99796 * 9 7 2 20 20 H 1.09003 * 109.46878 * 59.99859 * 10 9 7 21 21 H 1.08995 * 109.46890 * 299.99839 * 10 9 7 22 22 H 1.07996 * 126.12132 * 359.97438 * 12 11 10 23 23 H 1.08003 * 126.04518 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 1.6578 -5.9314 -0.8927 13 6 0.8044 -6.9222 -0.5452 14 6 0.1139 -6.5132 0.6016 15 17 -1.0957 -7.4307 1.4434 16 7 0.5382 -5.3190 0.9295 17 1 -0.4849 0.8401 -0.0004 18 1 0.6247 -2.5571 -0.8896 19 1 0.6241 -2.5566 0.8904 20 1 2.8719 -3.6043 0.8905 21 1 2.8719 -3.6044 -0.8894 22 1 2.3335 -5.9395 -1.7351 23 1 0.6783 -7.8625 -1.0614 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307319850.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:56 Heat of formation + Delta-G solvation = 39.888928 kcal Electronic energy + Delta-G solvation = -10253.760304 eV Core-core repulsion = 8128.613113 eV Total energy + Delta-G solvation = -2125.147190 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.13330 -37.74369 -36.10524 -34.12395 -31.42882 -30.52770 -26.82961 -23.74399 -22.18808 -21.48217 -18.83923 -17.83854 -16.68576 -16.33341 -15.77149 -15.12147 -14.59092 -14.36569 -14.06462 -13.60657 -13.09150 -12.83249 -12.51639 -12.44693 -12.05533 -11.77868 -11.46070 -11.36462 -10.63348 -10.29641 -9.55756 -8.25137 -6.39328 0.53760 0.88871 1.41732 1.42657 1.55838 1.67027 2.01868 2.40517 3.09693 3.71391 4.06854 4.38190 4.54449 4.66496 4.70702 4.84623 5.30594 5.39562 5.48562 5.70588 6.00291 6.16954 6.58059 6.78212 7.31710 8.87525 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.068323 B = 0.007058 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.720797 B = 3966.298874 C = 4250.976102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.023 3.977 10 C 0.144 3.856 11 N -0.356 5.356 12 C 0.072 3.928 13 C -0.271 4.271 14 C 0.095 3.905 15 Cl 0.002 6.998 16 N -0.331 5.331 17 H 0.264 0.736 18 H -0.010 1.010 19 H -0.011 1.011 20 H 0.082 0.918 21 H 0.127 0.873 22 H 0.226 0.774 23 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 -12.378 -2.626 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.097 0.903 9 C -0.015 4.015 10 C 0.025 3.975 11 N -0.140 5.140 12 C -0.075 4.075 13 C -0.301 4.301 14 C -0.095 4.095 15 Cl 0.030 6.970 16 N -0.158 5.158 17 H 0.073 0.927 18 H 0.008 0.992 19 H 0.008 0.992 20 H 0.100 0.900 21 H 0.145 0.855 22 H 0.243 0.757 23 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.219 -11.268 -1.728 12.155 hybrid contribution -0.324 0.264 -0.215 0.470 sum 3.895 -11.005 -1.943 11.834 Atomic orbital electron populations 1.70155 1.08261 1.27935 1.51056 1.26086 0.95712 1.03914 0.94378 0.85250 0.79336 0.78010 0.77519 1.17561 1.20455 1.20941 1.21547 0.94103 0.91031 1.51374 0.90295 1.19144 0.94385 0.92675 0.95284 1.22115 0.93353 0.77545 1.04523 1.49056 1.29162 1.15633 1.20123 1.23451 1.00765 0.86974 0.96322 1.21618 1.03648 1.04599 1.00200 1.23019 0.96696 0.92963 0.96836 1.98340 1.51905 1.69294 1.77503 1.77353 1.07826 1.13993 1.16636 0.92745 0.99159 0.99249 0.89985 0.85491 0.75747 0.79769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.97 14 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 14 3 Si 0.97 42.94 29.54 68.60 2.03 44.97 14 4 H -0.25 -10.23 7.11 99.48 0.71 -9.52 14 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 14 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 14 7 C -0.54 -29.38 9.11 25.60 0.23 -29.15 14 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 14 9 C 0.02 1.20 5.16 29.85 0.15 1.35 14 10 C 0.14 5.52 6.45 86.38 0.56 6.08 14 11 N -0.36 -13.24 3.68 -348.07 -1.28 -14.52 14 12 C 0.07 1.95 11.45 83.54 0.96 2.91 14 13 C -0.27 -7.45 10.80 22.01 0.24 -7.21 14 14 C 0.10 3.31 7.85 85.25 0.67 3.98 14 15 Cl 0.00 0.06 29.32 -2.72 -0.08 -0.02 14 16 N -0.33 -13.97 12.42 -49.68 -0.62 -14.59 14 17 H 0.26 15.16 8.31 -92.71 -0.77 14.39 14 18 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 14 19 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 14 20 H 0.08 3.06 8.14 -2.39 -0.02 3.04 14 21 H 0.13 3.90 8.07 -2.39 -0.02 3.88 14 22 H 0.23 3.68 8.06 -2.91 -0.02 3.66 14 23 H 0.19 3.63 8.06 -2.91 -0.02 3.61 14 Total: -1.00 -69.05 230.49 4.81 -64.25 By element: Atomic # 1 Polarization: -2.59 SS G_CDS: 1.20 Total: -1.39 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 3.27 Total: -21.72 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -1.61 Total: -86.08 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -0.08 Total: -0.02 kcal Total: -69.05 4.81 -64.25 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307319850.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.136 kcal (2) G-P(sol) polarization free energy of solvation -69.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds