Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08992 * 109.47558 * 2 1 4 4 C 1.50709 * 109.46990 * 240.00193 * 2 1 3 5 5 H 1.07998 * 119.99792 * 240.00216 * 4 2 1 6 6 C 1.37882 * 119.99683 * 60.00118 * 4 2 1 7 7 N 1.31512 * 119.99698 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99675 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46970 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46896 * 119.99897 * 8 6 4 11 11 H 1.48498 * 109.46529 * 239.99783 * 8 6 4 12 12 N 1.46906 * 109.47301 * 120.00632 * 2 1 3 13 13 C 1.46895 * 110.99933 * 58.95177 * 12 2 1 14 14 C 1.46895 * 110.99824 * 294.99760 * 12 2 1 15 15 H 1.09001 * 115.56372 * 34.30600 * 14 12 2 16 16 C 1.53079 * 117.49256 * 248.60173 * 14 12 2 17 17 C 1.52993 * 117.49951 * 180.02562 * 14 12 2 18 18 H 1.08998 * 117.50110 * 359.97438 * 17 14 12 19 19 C 1.53006 * 117.50097 * 214.97919 * 17 14 12 20 20 O 1.42901 * 109.47035 * 175.08752 * 19 17 14 21 21 H 1.08995 * 109.47154 * 59.99508 * 1 2 3 22 22 H 1.09006 * 109.47554 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46818 * 299.99427 * 1 2 3 24 24 H 0.97004 * 119.99665 * 180.02562 * 7 6 4 25 25 H 1.09005 * 109.46895 * 296.04491 * 13 12 2 26 26 H 1.09004 * 109.47650 * 56.04653 * 13 12 2 27 27 H 1.09004 * 109.47360 * 176.04770 * 13 12 2 28 28 H 1.09002 * 117.50988 * 145.03307 * 16 14 12 29 29 H 1.08998 * 117.51393 * 359.97438 * 16 14 12 30 30 H 1.09001 * 109.46721 * 295.08803 * 19 17 14 31 31 H 1.08995 * 109.47046 * 55.08188 * 19 17 14 32 32 H 0.96702 * 113.99350 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6033 8 14 2.3212 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6040 10 1 1.1658 -1.5864 -4.8162 11 1 3.1464 -0.1871 -4.8166 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2458 14 6 1.6488 0.0389 2.4180 15 1 0.6877 0.5521 2.3844 16 6 2.7756 0.6996 3.2162 17 6 2.0870 -0.5537 3.7587 18 1 2.6502 -1.4867 3.7366 19 6 1.1424 -0.3814 4.9499 20 8 1.6612 -1.0920 6.0760 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.7080 1.1611 -3.4843 25 1 0.4419 -2.0731 1.3346 26 1 1.8166 -2.5951 0.3316 27 1 1.9617 -2.5871 2.1056 28 1 2.5557 1.6474 3.7076 29 1 3.7918 0.5910 2.8372 30 1 1.0574 0.6771 5.1960 31 1 0.1588 -0.7749 4.6936 32 1 1.1118 -1.0270 6.8691 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307942604.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = -19.405215 kcal Electronic energy + Delta-G solvation = -13087.216552 eV Core-core repulsion = 10855.881110 eV Total energy + Delta-G solvation = -2231.335442 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.45461 -36.53780 -34.58653 -32.13907 -28.45670 -26.80822 -25.25652 -24.56966 -21.56195 -20.21663 -18.85533 -17.20587 -16.10526 -15.77806 -14.76893 -14.48413 -14.01915 -13.56129 -13.12804 -12.80232 -12.25152 -11.95941 -11.40922 -11.19725 -10.89030 -10.74991 -10.63830 -10.52132 -10.35748 -10.06191 -9.97998 -9.63840 -9.25761 -8.83980 -8.38511 -7.13938 -6.00669 -4.04185 3.30694 3.38465 3.43283 4.01276 4.32439 4.44159 4.94503 5.22345 5.31544 5.44118 5.47588 5.54503 5.86612 5.89196 6.10914 6.25861 6.40541 6.51335 6.62650 6.68980 6.83078 6.90932 7.14285 7.51584 7.63599 7.72392 7.85972 8.14240 8.39378 8.61443 9.02145 9.60778 11.06700 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.069982 B = 0.007800 C = 0.007609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.004836 B = 3588.759485 C = 3679.188192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.041 0.959 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.509 5.509 13 C 0.037 3.963 14 C 0.030 3.970 15 H 0.085 0.915 16 C -0.161 4.161 17 C -0.160 4.160 18 H 0.111 0.889 19 C 0.108 3.892 20 O -0.573 6.573 21 H 0.088 0.912 22 H 0.030 0.970 23 H 0.007 0.993 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -1.473 11.197 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.106 3.894 3 H 0.058 0.942 4 C -0.538 4.538 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.233 5.233 13 C -0.111 4.111 14 C -0.080 4.080 15 H 0.102 0.898 16 C -0.199 4.199 17 C -0.178 4.178 18 H 0.129 0.871 19 C 0.031 3.969 20 O -0.377 6.377 21 H 0.107 0.893 22 H 0.049 0.951 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.331 -1.525 10.573 10.687 hybrid contribution -1.142 -0.164 -0.486 1.252 sum -1.472 -1.689 10.087 10.332 Atomic orbital electron populations 1.22400 1.00902 0.99361 1.00437 1.19307 0.89732 0.94711 0.85644 0.94158 1.21164 1.30524 1.12455 0.89646 0.91844 1.24932 0.95244 0.95140 0.99020 1.69900 1.37118 1.23120 1.23284 0.86456 0.78519 0.79671 0.82863 1.19736 1.21176 1.21045 1.62215 1.58632 1.01640 1.00763 1.22196 0.96906 0.90744 1.01278 1.22580 0.96636 1.00563 0.88208 0.89778 1.23204 0.99072 0.94836 1.02771 1.22279 1.03068 0.99413 0.93071 0.87059 1.21726 0.95355 0.94543 0.85296 1.86501 1.53134 1.75605 1.22497 0.89308 0.95086 0.97411 0.93071 0.96527 0.90652 0.93888 0.89497 0.88259 0.93687 0.93615 0.77919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.35 37.15 0.31 -3.87 16 2 C 0.21 5.41 2.35 -68.86 -0.16 5.25 16 3 H 0.04 1.14 8.13 -51.93 -0.42 0.71 16 4 C -0.50 -13.77 7.88 -34.43 -0.27 -14.04 16 5 H 0.06 1.76 6.77 -52.49 -0.36 1.40 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.51 -11.26 4.89 -228.25 -1.12 -12.38 16 13 C 0.04 0.75 8.62 60.06 0.52 1.27 16 14 C 0.03 0.56 4.76 -67.68 -0.32 0.24 16 15 H 0.08 1.60 6.28 -51.93 -0.33 1.27 16 16 C -0.16 -2.67 10.11 -26.72 -0.27 -2.94 16 17 C -0.16 -2.58 5.29 -90.65 -0.48 -3.06 16 18 H 0.11 1.94 7.27 -51.93 -0.38 1.56 16 19 C 0.11 1.43 7.33 37.16 0.27 1.70 16 20 O -0.57 -7.29 13.66 -35.23 -0.48 -7.77 16 21 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 22 H 0.03 0.73 6.48 -51.93 -0.34 0.39 16 23 H 0.01 0.16 6.35 -51.93 -0.33 -0.17 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.02 0.33 6.51 -51.93 -0.34 -0.01 16 26 H 0.07 1.63 6.41 -51.93 -0.33 1.29 16 27 H 0.04 0.78 6.90 -51.93 -0.36 0.42 16 28 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 29 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.04 0.53 7.88 -51.93 -0.41 0.12 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.37 2.77 9.12 45.56 0.42 3.18 16 LS Contribution 257.49 15.07 3.88 3.88 Total: -1.00 -29.82 257.49 -6.49 -36.31 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.88 Total: 2.47 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -0.50 Total: -13.96 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.49 Total: -37.33 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.48 Total: -7.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.82 -6.49 -36.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307942604.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.904 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds