Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46785 * 2 1 4 4 C 1.50699 * 109.47251 * 240.00298 * 2 1 3 5 5 H 1.07995 * 119.99778 * 334.74195 * 4 2 1 6 6 C 1.37871 * 120.00008 * 154.74564 * 4 2 1 7 7 N 1.31513 * 119.99891 * 187.28069 * 6 4 2 8 8 Si 1.86806 * 120.00079 * 7.28273 * 6 4 2 9 9 H 1.48505 * 109.46919 * 92.01862 * 8 6 4 10 10 H 1.48500 * 109.47145 * 212.01960 * 8 6 4 11 11 H 1.48496 * 109.46788 * 332.02048 * 8 6 4 12 12 N 1.46898 * 109.47312 * 119.99694 * 2 1 3 13 13 C 1.46901 * 110.99800 * 58.95383 * 12 2 1 14 14 C 1.46904 * 111.00201 * 295.00633 * 12 2 1 15 15 H 1.08999 * 115.55096 * 52.96122 * 14 12 2 16 16 C 1.52997 * 117.49511 * 267.25712 * 14 12 2 17 17 C 1.52998 * 117.49698 * 198.63357 * 14 12 2 18 18 H 1.09000 * 117.49610 * 214.99346 * 17 14 12 19 19 C 1.52999 * 117.50003 * 0.02562 * 17 14 12 20 20 O 1.42904 * 109.47061 * 179.90546 * 19 17 14 21 21 H 1.08996 * 109.47275 * 294.00199 * 1 2 3 22 22 H 1.08989 * 109.47380 * 54.00971 * 1 2 3 23 23 H 1.09005 * 109.46402 * 174.00824 * 1 2 3 24 24 H 0.96997 * 119.99897 * 179.97438 * 7 6 4 25 25 H 1.08994 * 109.47731 * 301.02182 * 13 12 2 26 26 H 1.09005 * 109.46638 * 61.02239 * 13 12 2 27 27 H 1.09000 * 109.47069 * 181.01899 * 13 12 2 28 28 H 1.09001 * 117.50423 * 359.97438 * 16 14 12 29 29 H 1.08995 * 117.50142 * 145.02340 * 16 14 12 30 30 H 1.09006 * 109.46735 * 299.90192 * 19 17 14 31 31 H 1.08996 * 109.47323 * 59.90381 * 19 17 14 32 32 H 0.96702 * 113.99944 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 1.4149 -1.4514 -1.7160 6 6 3.2803 -0.4141 -1.7363 7 7 3.6619 -0.9251 -2.8864 8 14 4.4292 0.7130 -0.7878 9 1 5.3015 -0.1004 0.0970 10 1 5.2695 1.4799 -1.7422 11 1 3.6297 1.6552 0.0356 12 7 2.0198 -0.6924 1.1994 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0392 2.4181 15 1 0.5903 0.2797 2.5182 16 6 2.6580 1.0468 2.9720 17 6 2.4247 -0.2799 3.6975 18 1 1.8768 -0.2492 4.6393 19 6 3.5281 -1.3361 3.6096 20 8 4.1377 -1.4960 4.8922 21 1 -0.3633 0.4180 0.9388 22 1 -0.3633 0.6038 -0.8314 23 1 -0.3632 -1.0221 -0.1073 24 1 4.5397 -0.7164 -3.2424 25 1 0.4385 -2.0748 1.2457 26 1 1.8914 -2.6200 0.3739 27 1 1.8909 -2.5600 2.1529 28 1 3.5976 1.1666 2.4325 29 1 2.2638 1.9505 3.4366 30 1 3.0977 -2.2856 3.2910 31 1 4.2796 -1.0173 2.8874 32 1 4.8478 -2.1522 4.9111 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307942606.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = -17.390074 kcal Electronic energy + Delta-G solvation = -13506.092942 eV Core-core repulsion = 11274.844883 eV Total energy + Delta-G solvation = -2231.248059 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.58055 -36.31845 -34.52856 -32.07088 -29.24090 -26.85694 -25.51912 -24.41128 -21.49334 -20.11614 -18.53311 -17.25204 -16.80074 -15.64734 -14.74491 -14.39082 -13.86575 -13.63578 -13.14076 -12.98424 -12.52582 -12.02045 -11.73974 -11.40423 -11.22133 -10.86615 -10.62391 -10.50545 -10.25130 -9.90840 -9.63376 -9.57068 -9.21711 -8.96822 -8.55049 -7.27577 -6.07635 -4.11055 3.40835 3.45966 3.52951 4.05843 4.49483 4.52299 4.65877 5.28681 5.36130 5.54484 5.68368 5.76357 5.83619 5.98933 6.11565 6.20142 6.24116 6.30598 6.36792 6.45978 6.56306 6.61391 6.86435 7.01200 7.18415 7.66201 7.82980 8.05851 8.26792 8.58436 8.95770 9.57566 11.03434 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032221 B = 0.013785 C = 0.011902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.801901 B = 2030.748348 C = 2352.025588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.168 3.832 3 H 0.053 0.947 4 C -0.502 4.502 5 H 0.071 0.929 6 C 0.081 3.919 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.301 1.301 11 H -0.260 1.260 12 N -0.511 5.511 13 C 0.036 3.964 14 C 0.019 3.981 15 H 0.081 0.919 16 C -0.166 4.166 17 C -0.148 4.148 18 H 0.102 0.898 19 C 0.110 3.890 20 O -0.582 6.582 21 H 0.028 0.972 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.014 0.986 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.368 0.556 11.096 11.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.071 0.929 4 C -0.541 4.541 5 H 0.089 0.911 6 C -0.123 4.123 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.229 1.229 11 H -0.185 1.185 12 N -0.236 5.236 13 C -0.111 4.111 14 C -0.091 4.091 15 H 0.098 0.902 16 C -0.203 4.203 17 C -0.166 4.166 18 H 0.120 0.880 19 C 0.033 3.967 20 O -0.387 6.387 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.162 0.994 11.075 11.180 hybrid contribution 0.184 0.127 0.251 0.336 sum -0.978 1.121 11.327 11.424 Atomic orbital electron populations 1.22302 1.00274 1.00706 0.99049 1.19961 0.89866 0.95859 0.87972 0.92910 1.20850 1.02045 1.23985 1.07172 0.91132 1.25045 0.97806 0.95459 0.93967 1.69946 1.20359 1.45111 1.18090 0.86576 0.80524 0.81043 0.79379 1.20331 1.22878 1.18532 1.62806 1.58933 1.01706 1.00139 1.22205 0.96776 0.90767 1.01387 1.22641 0.94339 1.00977 0.91122 0.90206 1.23131 1.01802 0.92477 1.02906 1.22174 1.00658 0.97532 0.96283 0.88005 1.21734 0.93983 0.97498 0.83485 1.86408 1.54730 1.64590 1.33017 0.95310 0.93088 0.93445 0.92705 0.96726 0.90211 0.93648 0.88596 0.89336 0.92746 0.92753 0.77891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 8.46 37.16 0.31 -3.01 16 2 C 0.17 3.88 1.72 -68.86 -0.12 3.76 16 3 H 0.05 1.28 5.71 -51.93 -0.30 0.99 16 4 C -0.50 -13.69 7.71 -34.44 -0.27 -13.95 16 5 H 0.07 2.09 8.05 -52.49 -0.42 1.67 16 6 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 7 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 8 Si 0.90 22.29 27.36 -169.99 -4.65 17.64 16 9 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 11 H -0.26 -6.21 5.97 56.52 0.34 -5.87 16 12 N -0.51 -10.67 3.85 -228.29 -0.88 -11.55 16 13 C 0.04 0.70 8.69 60.07 0.52 1.23 16 14 C 0.02 0.33 4.58 -67.71 -0.31 0.02 16 15 H 0.08 1.38 6.49 -51.93 -0.34 1.04 16 16 C -0.17 -2.84 10.10 -26.73 -0.27 -3.11 16 17 C -0.15 -2.43 5.96 -90.62 -0.54 -2.97 16 18 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 19 C 0.11 1.79 6.48 37.16 0.24 2.03 16 20 O -0.58 -8.59 13.66 -35.23 -0.48 -9.07 16 21 H 0.03 0.51 6.28 -51.93 -0.33 0.19 16 22 H 0.05 1.02 8.14 -51.94 -0.42 0.59 16 23 H 0.05 0.95 6.70 -51.93 -0.35 0.60 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.27 6.36 -51.93 -0.33 -0.06 16 26 H 0.08 1.72 7.16 -51.93 -0.37 1.35 16 27 H 0.04 0.78 5.36 -51.93 -0.28 0.50 16 28 H 0.10 1.82 8.05 -51.93 -0.42 1.40 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.05 0.86 5.69 -51.93 -0.30 0.56 16 31 H 0.05 0.97 7.90 -51.93 -0.41 0.56 16 32 H 0.37 3.75 9.12 45.56 0.42 4.17 16 LS Contribution 253.79 15.07 3.82 3.82 Total: -1.00 -30.20 253.79 -5.82 -36.03 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -3.89 Total: 3.23 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.53 Total: -13.81 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.11 Total: -37.84 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.48 Total: -9.07 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.65 Total: 17.64 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.20 -5.82 -36.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307942606.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.635 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds