Wall clock time and date at job start Mon Mar 30 2020 02:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99866 * 2 1 4 4 H 1.08996 * 112.85126 * 341.20002 * 3 2 1 5 5 C 1.53786 * 113.61401 * 112.50835 * 3 2 1 6 6 C 1.53781 * 87.08386 * 139.97869 * 5 3 2 7 7 H 1.08998 * 113.69009 * 89.12509 * 6 5 3 8 8 N 1.46898 * 113.61537 * 220.01929 * 6 5 3 9 9 C 1.46904 * 110.99723 * 289.28520 * 8 6 5 10 10 C 1.46892 * 111.00011 * 165.33502 * 8 6 5 11 11 C 1.50705 * 109.46959 * 189.99924 * 10 8 6 12 12 H 1.07998 * 120.00000 * 359.97438 * 11 10 8 13 13 C 1.37877 * 119.99900 * 179.97438 * 11 10 8 14 14 N 1.31516 * 120.00297 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00002 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46921 * 89.99824 * 15 13 11 17 17 H 1.48498 * 109.46901 * 210.00129 * 15 13 11 18 18 H 1.48499 * 109.46803 * 330.00063 * 15 13 11 19 19 C 1.53782 * 87.07936 * 334.56777 * 6 5 3 20 20 H 1.08997 * 109.46850 * 59.99593 * 1 2 3 21 21 H 1.08997 * 109.46925 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46835 * 300.00225 * 1 2 3 23 23 H 1.09001 * 113.61274 * 25.42855 * 5 3 2 24 24 H 1.08996 * 113.61023 * 254.52874 * 5 3 2 25 25 H 1.09002 * 109.46707 * 54.81971 * 9 8 6 26 26 H 1.09000 * 109.47120 * 174.81775 * 9 8 6 27 27 H 1.08997 * 109.47201 * 294.81961 * 9 8 6 28 28 H 1.09005 * 109.47101 * 309.99653 * 10 8 6 29 29 H 1.08998 * 109.47471 * 70.00076 * 10 8 6 30 30 H 0.96999 * 120.00075 * 179.97438 * 14 13 11 31 31 H 1.09000 * 113.61758 * 139.98195 * 19 6 5 32 32 H 1.08999 * 113.61443 * 270.79714 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3237 5 6 2.7536 1.6489 1.3017 6 6 3.8228 2.3181 0.4222 7 1 3.6236 3.3694 0.2143 8 7 5.1973 2.0779 0.8815 9 6 5.4713 2.8075 2.1267 10 6 6.1700 2.4317 -0.1608 11 6 7.5386 1.9480 0.2443 12 1 7.6725 1.4300 1.1825 13 6 8.6199 2.1668 -0.5827 14 7 8.4571 2.7981 -1.7250 15 14 10.3165 1.5680 -0.0802 16 1 10.5241 0.1875 -0.5865 17 1 11.3491 2.4668 -0.6555 18 1 10.4247 1.5736 1.4008 19 6 3.3756 1.3719 -0.7045 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.1168 0.7739 1.8409 24 1 2.2142 2.3476 1.9412 25 1 4.7236 2.5434 2.8746 26 1 6.4624 2.5405 2.4937 27 1 5.4313 3.8799 1.9358 28 1 5.8821 1.9615 -1.1012 29 1 6.1899 3.5142 -0.2870 30 1 9.2178 2.9523 -2.3066 31 1 3.3383 1.8471 -1.6848 32 1 3.9098 0.4219 -0.7148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307994769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:30 Heat of formation + Delta-G solvation = -21.895678 kcal Electronic energy + Delta-G solvation = -12936.669368 eV Core-core repulsion = 10705.225932 eV Total energy + Delta-G solvation = -2231.443437 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.24998 -36.63761 -34.09402 -32.15253 -27.38444 -26.80703 -25.62115 -24.65385 -22.87327 -20.67921 -18.93936 -16.66172 -16.23497 -15.40301 -14.98587 -14.77840 -14.46632 -13.56216 -13.35003 -13.02132 -11.99151 -11.96536 -11.76035 -11.63489 -11.27684 -10.92400 -10.81454 -10.66536 -10.47183 -10.28119 -10.18362 -9.64065 -9.24958 -9.10193 -8.39091 -7.20685 -5.98793 -3.99711 3.35204 3.40730 3.44542 3.95056 4.46626 4.89247 5.04772 5.07317 5.18509 5.28197 5.37024 5.37636 5.41592 5.63215 5.77638 6.01479 6.16834 6.24946 6.34825 6.43362 6.59387 6.65504 6.80627 7.37211 7.38476 7.44974 7.85716 8.15426 8.25529 8.61579 9.08185 9.64291 11.12253 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.059872 B = 0.007313 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.552302 B = 3828.112760 C = 3980.023925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.058 3.942 4 H 0.081 0.919 5 C -0.141 4.141 6 C 0.057 3.943 7 H 0.053 0.947 8 N -0.527 5.527 9 C 0.040 3.960 10 C 0.191 3.809 11 C -0.506 4.506 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.118 4.118 20 H 0.038 0.962 21 H 0.081 0.919 22 H 0.037 0.963 23 H 0.096 0.904 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.010 0.990 28 H 0.033 0.967 29 H -0.011 1.011 30 H 0.261 0.739 31 H 0.066 0.934 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 -1.369 3.773 13.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.294 6.294 3 C 0.000 4.000 4 H 0.099 0.901 5 C -0.179 4.179 6 C -0.052 4.052 7 H 0.070 0.930 8 N -0.252 5.252 9 C -0.109 4.109 10 C 0.066 3.934 11 C -0.545 4.545 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.156 4.156 20 H 0.056 0.944 21 H 0.099 0.901 22 H 0.056 0.944 23 H 0.115 0.885 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.051 0.949 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.608 -1.968 3.711 13.289 hybrid contribution 0.673 0.918 -0.048 1.139 sum -11.935 -1.051 3.662 12.528 Atomic orbital electron populations 1.22732 0.82081 1.02271 0.99532 1.87987 1.18849 1.27896 1.94633 1.23684 0.93952 0.84449 0.97937 0.90101 1.23515 0.96678 1.01140 0.96552 1.22713 0.90617 0.95926 0.95984 0.92963 1.62327 1.00518 1.56598 1.05745 1.22149 1.01472 0.94821 0.92448 1.19725 0.89763 0.94138 0.89732 1.21183 0.91787 1.36181 1.05301 0.91894 1.24989 0.99252 0.95420 0.94996 1.69963 1.31032 1.42054 1.10932 0.86499 0.83647 0.78577 0.78696 1.20621 1.21370 1.19884 1.23194 0.93711 1.01421 0.97271 0.94373 0.90077 0.94393 0.88530 0.92364 0.93742 0.90909 0.97141 0.94924 0.99343 0.92987 0.91575 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.42 16 2 O -0.38 -5.68 10.71 -35.23 -0.38 -6.06 16 3 C 0.06 0.86 4.31 -25.91 -0.11 0.75 16 4 H 0.08 1.02 7.87 -51.93 -0.41 0.61 16 5 C -0.14 -2.20 6.95 -25.92 -0.18 -2.38 16 6 C 0.06 1.06 3.17 -66.90 -0.21 0.85 16 7 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 8 N -0.53 -11.77 4.69 -235.35 -1.10 -12.87 16 9 C 0.04 0.80 9.28 60.07 0.56 1.36 16 10 C 0.19 5.11 4.65 -4.98 -0.02 5.09 16 11 C -0.51 -14.51 8.53 -34.44 -0.29 -14.80 16 12 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 15 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.12 -2.09 6.74 -25.92 -0.17 -2.26 16 20 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 21 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.76 7.53 -51.93 -0.39 0.37 16 26 H 0.07 1.55 6.89 -51.93 -0.36 1.19 16 27 H 0.01 0.20 8.13 -51.93 -0.42 -0.22 16 28 H 0.03 0.92 7.31 -51.93 -0.38 0.54 16 29 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 265.88 15.07 4.01 4.01 Total: -1.00 -30.73 265.88 -6.47 -37.20 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -5.27 Total: -4.28 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 0.56 Total: -8.52 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.37 Total: -39.28 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.38 Total: -6.06 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.73 -6.47 -37.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307994769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.301 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds